RNA id: TU886357


Basic Information

Item Value
RNA id TU886357
length 201
lncRNA type inter_gene
GC content 0.31
exon number 2
gene id G777889
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 19309195 ~ 19309430 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTTTATCTAACTGTCCAATCTACAGTagttattacagtgaaagaataccatgaaaagttattaaaagGAGCTTGAACAGAATACAACAAATTGTAACACACAATGAAAAAGCCATAGTTATACATATAGTGTGGGAAACAACAAATCAATTCACATTATTAAAGAGCATAAGTTGATGTTTCAGTCCATGTTTTGGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU886329 lncRNA upstream 32388 19276224 ~ 19276807 (+) True G777865
TU886164 lncRNA upstream 232428 19076112 ~ 19076767 (+) False G777707
TU886165 lncRNA upstream 232428 19076134 ~ 19076767 (+) False G777707
TU886166 lncRNA upstream 232550 19076112 ~ 19076645 (+) False G777707
TU886167 lncRNA upstream 232550 19076134 ~ 19076645 (+) True G777707
TU886385 lncRNA downstream 35190 19344620 ~ 19349872 (+) True G777913
TU886378 lncRNA downstream 90083 19399513 ~ 19400279 (+) True LOC110531683
TU887563 lncRNA downstream 235641 19545071 ~ 19555880 (+) True G778967
TU887652 lncRNA downstream 285758 19595188 ~ 19595413 (+) True G779052
TU887684 lncRNA downstream 326878 19636308 ~ 19706947 (+) True G779083
XR_005053200.1 mRNA upstream 114463 19193597 ~ 19194732 (+) True LOC118966013
LOC118966168 mRNA upstream 164332 19131879 ~ 19144863 (+) True LOC118966168
XR_002474737.2 mRNA upstream 201288 19093068 ~ 19107907 (+) True LOC110531675
XM_021614999.2 mRNA downstream 27211 19336641 ~ 19338562 (+) True LOC110531678
XM_036987523.1 mRNA downstream 31297 19340727 ~ 19343839 (+) True LOC110532958
XM_036989270.1 mRNA downstream 55250 19364680 ~ 19370927 (+) True LOC110532960
XR_005053201.1 mRNA downstream 86537 19395967 ~ 19399905 (+) False LOC110531683
XM_036987519.1 mRNA downstream 86537 19395967 ~ 19400305 (+) False LOC110531683
TU885868 other upstream 651621 18656331 ~ 18657574 (+) True LOC110531664
TU885818 other upstream 809177 18499614 ~ 18500018 (+) True G777396
TU885567 other upstream 1200713 18108019 ~ 18108482 (+) True G777165
TU885507 other upstream 1303527 18003267 ~ 18005668 (+) True G777113
TU885503 other upstream 1307013 18001889 ~ 18002182 (+) True G777111
TU887666 other downstream 508258 19817688 ~ 19824606 (+) False LOC110531694
TU887667 other downstream 508258 19817688 ~ 19824606 (+) True LOC110531694
TU887801 other downstream 566838 19876268 ~ 19892447 (+) True LOC110531697
TU887900 other downstream 700086 20009516 ~ 20022036 (+) False LOC110531703
TU887902 other downstream 700086 20009516 ~ 20023468 (+) False LOC110531703

Expression Profile