RNA id: TU887563


Basic Information

Item Value
RNA id TU887563
length 205
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G778967
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 19545071 ~ 19555880 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaatcaaatgtatttatatagcccttcgtacatcagctgatatctcaaagtgctgtacagaaacccagcctaaaaccccaaacagcaagcaatgcaggtgtagaagcatggtggcttggaaaaactccctagaaaggccaaaacctaggaagaaacctagagaggaaccaggctatgaggggtggccagtcctcttctggctgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU886378 lncRNA upstream 144792 19399513 ~ 19400279 (+) True LOC110531683
TU886385 lncRNA upstream 195199 19344620 ~ 19349872 (+) True G777913
TU886357 lncRNA upstream 235641 19309195 ~ 19309430 (+) True G777889
TU886329 lncRNA upstream 268264 19276224 ~ 19276807 (+) True G777865
TU886165 lncRNA upstream 468304 19076134 ~ 19076767 (+) False G777707
TU887652 lncRNA downstream 39308 19595188 ~ 19595413 (+) True G779052
TU887684 lncRNA downstream 80428 19636308 ~ 19706947 (+) True G779083
TU887738 lncRNA downstream 208048 19763928 ~ 19764140 (+) True G779137
TU887739 lncRNA downstream 209327 19765207 ~ 19765716 (+) True G779138
TU887771 lncRNA downstream 293721 19849601 ~ 19850354 (+) True LOC110531693
XM_021615002.2 mRNA upstream 38571 19503965 ~ 19506500 (+) True LOC110531681
LOC110532963 mRNA upstream 67390 19473444 ~ 19477681 (+) True LOC110532963
XM_036987524.1 mRNA upstream 87528 19455712 ~ 19457543 (+) True LOC110531684
XM_036987520.1 mRNA upstream 101920 19395967 ~ 19443151 (+) False LOC110531683
XM_036987519.1 mRNA upstream 144766 19395967 ~ 19400305 (+) False LOC110531683
XM_021615008.2 mRNA downstream 13374 19569254 ~ 19571207 (+) True LOC110531687
LOC110532966 mRNA downstream 60255 19616135 ~ 19704178 (+) True LOC110532966
NM_001246338.1 mRNA downstream 150165 19706045 ~ 19723541 (+) True il13ra1b
XM_021614386.2 mRNA downstream 192284 19748164 ~ 19755992 (+) False il13ra1a
NM_001246337.1 mRNA downstream 192309 19748189 ~ 19755990 (+) True il13ra1a
TU885868 other upstream 887497 18656331 ~ 18657574 (+) True LOC110531664
TU885818 other upstream 1045053 18499614 ~ 18500018 (+) True G777396
TU885567 other upstream 1436589 18108019 ~ 18108482 (+) True G777165
TU885507 other upstream 1539403 18003267 ~ 18005668 (+) True G777113
TU885503 other upstream 1542889 18001889 ~ 18002182 (+) True G777111
TU887666 other downstream 261808 19817688 ~ 19824606 (+) False LOC110531694
TU887667 other downstream 261808 19817688 ~ 19824606 (+) True LOC110531694
TU887801 other downstream 320388 19876268 ~ 19892447 (+) True LOC110531697
TU887900 other downstream 453636 20009516 ~ 20022036 (+) False LOC110531703
TU887902 other downstream 453636 20009516 ~ 20023468 (+) False LOC110531703

Expression Profile