RNA id: TU887652


Basic Information

Item Value
RNA id TU887652
length 226
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G779052
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 19595188 ~ 19595413 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTAAAAACACCAattgggacaagttcttccagtttaaaagtattttgtaaggtgtttcaagacgatggcgcagagtacataaaagcccttttaccaaattcagtgcggacatttggaacagttagcaggataaagtcctgcggacgaagagagtacccaccacatttctgaacaataaaagtGCCcaaataaaatggtagtaaacccaaaatggctaaATAAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU887563 lncRNA upstream 39308 19545071 ~ 19555880 (+) True G778967
TU886378 lncRNA upstream 194909 19399513 ~ 19400279 (+) True LOC110531683
TU886385 lncRNA upstream 245316 19344620 ~ 19349872 (+) True G777913
TU886357 lncRNA upstream 285758 19309195 ~ 19309430 (+) True G777889
TU886329 lncRNA upstream 318381 19276224 ~ 19276807 (+) True G777865
TU887684 lncRNA downstream 40895 19636308 ~ 19706947 (+) True G779083
TU887738 lncRNA downstream 168515 19763928 ~ 19764140 (+) True G779137
TU887739 lncRNA downstream 169794 19765207 ~ 19765716 (+) True G779138
TU887771 lncRNA downstream 254188 19849601 ~ 19850354 (+) True LOC110531693
TU887788 lncRNA downstream 267261 19862674 ~ 19870992 (+) True G779183
XM_021615008.2 mRNA upstream 23981 19569254 ~ 19571207 (+) True LOC110531687
XM_021615002.2 mRNA upstream 88688 19503965 ~ 19506500 (+) True LOC110531681
LOC110532963 mRNA upstream 117507 19473444 ~ 19477681 (+) True LOC110532963
XM_036987524.1 mRNA upstream 137645 19455712 ~ 19457543 (+) True LOC110531684
XM_036987521.1 mRNA upstream 194883 19396226 ~ 19400305 (+) False LOC110531683
LOC110532966 mRNA downstream 20722 19616135 ~ 19704178 (+) True LOC110532966
NM_001246338.1 mRNA downstream 110632 19706045 ~ 19723541 (+) True il13ra1b
XM_021614386.2 mRNA downstream 152751 19748164 ~ 19755992 (+) False il13ra1a
NM_001246337.1 mRNA downstream 152776 19748189 ~ 19755990 (+) True il13ra1a
trnar-ucu-3 mRNA downstream 174381 19769794 ~ 19769867 (+) True trnar-ucu-3
TU885868 other upstream 937614 18656331 ~ 18657574 (+) True LOC110531664
TU885818 other upstream 1095170 18499614 ~ 18500018 (+) True G777396
TU885567 other upstream 1486706 18108019 ~ 18108482 (+) True G777165
TU885507 other upstream 1589520 18003267 ~ 18005668 (+) True G777113
TU885503 other upstream 1593006 18001889 ~ 18002182 (+) True G777111
TU887666 other downstream 222275 19817688 ~ 19824606 (+) False LOC110531694
TU887667 other downstream 222275 19817688 ~ 19824606 (+) True LOC110531694
TU887801 other downstream 280855 19876268 ~ 19892447 (+) True LOC110531697
TU887900 other downstream 414103 20009516 ~ 20022036 (+) False LOC110531703
TU887902 other downstream 414103 20009516 ~ 20023468 (+) False LOC110531703

Expression Profile