RNA id: TU887738


Basic Information

Item Value
RNA id TU887738
length 213
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G779137
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 19763928 ~ 19764140 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acacaaaacaatacattcattgcactataacggtgacaaatggtgtccacaaactgttagggcctacataaagctttcccaacagcagagctttcttttcagcaccatggagtgaatccttaccaccgctacacctggctatcagcggagccttgtctggctgCGAAAcaattaattcagcctcatttactgccttttaaaaaaacatggcTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU887684 lncRNA upstream 56981 19636308 ~ 19706947 (+) True G779083
TU887652 lncRNA upstream 168515 19595188 ~ 19595413 (+) True G779052
TU887563 lncRNA upstream 208048 19545071 ~ 19555880 (+) True G778967
TU886378 lncRNA upstream 363649 19399513 ~ 19400279 (+) True LOC110531683
TU886385 lncRNA upstream 414056 19344620 ~ 19349872 (+) True G777913
TU887739 lncRNA downstream 1067 19765207 ~ 19765716 (+) True G779138
TU887771 lncRNA downstream 85461 19849601 ~ 19850354 (+) True LOC110531693
TU887788 lncRNA downstream 98534 19862674 ~ 19870992 (+) True G779183
TU887792 lncRNA downstream 100774 19864914 ~ 19872043 (+) False G779184
TU887793 lncRNA downstream 100774 19864914 ~ 19872043 (+) True G779184
XM_021614386.2 mRNA upstream 7936 19748164 ~ 19755992 (+) False il13ra1a
NM_001246337.1 mRNA upstream 7938 19748189 ~ 19755990 (+) True il13ra1a
NM_001246338.1 mRNA upstream 40387 19706045 ~ 19723541 (+) True il13ra1b
LOC110532966 mRNA upstream 59750 19616135 ~ 19704178 (+) True LOC110532966
XM_021615008.2 mRNA upstream 192721 19569254 ~ 19571207 (+) True LOC110531687
trnar-ucu-3 mRNA downstream 5654 19769794 ~ 19769867 (+) True trnar-ucu-3
XM_036987525.1 mRNA downstream 7026 19771166 ~ 19806842 (+) False LOC110531692
XM_036987526.1 mRNA downstream 7028 19771168 ~ 19806842 (+) True LOC110531692
LOC110532967 mRNA downstream 43577 19807717 ~ 19817403 (+) True LOC110532967
XM_021615013.2 mRNA downstream 53523 19817663 ~ 19824539 (+) False LOC110531694
TU885868 other upstream 1106354 18656331 ~ 18657574 (+) True LOC110531664
TU885818 other upstream 1263910 18499614 ~ 18500018 (+) True G777396
TU885567 other upstream 1655446 18108019 ~ 18108482 (+) True G777165
TU885507 other upstream 1758260 18003267 ~ 18005668 (+) True G777113
TU885503 other upstream 1761746 18001889 ~ 18002182 (+) True G777111
TU887666 other downstream 53548 19817688 ~ 19824606 (+) False LOC110531694
TU887667 other downstream 53548 19817688 ~ 19824606 (+) True LOC110531694
TU887801 other downstream 112128 19876268 ~ 19892447 (+) True LOC110531697
TU887900 other downstream 245376 20009516 ~ 20022036 (+) False LOC110531703
TU887902 other downstream 245376 20009516 ~ 20023468 (+) False LOC110531703

Expression Profile