RNA id: TU887793


Basic Information

Item Value
RNA id TU887793
length 246
lncRNA type read_through
GC content 0.43
exon number 2
gene id G779184
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 19864914 ~ 19872043 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCTCTGCAAACTCTGGTGATAATGGTGCTTCTGtccattcctcctcttcctctgtccctggGGTTCTTTCCACTGTATTTTCAGGTACTTCCTTACTAACAGTCATCTCCAATAGCTTCATTTTCAGAGATTTCATCTCACTTTGACTCTGGCATATCTCTGAACGCAGTGCTTCAGTGCCTTTAGAGATCAACTGGTTGATTTTGGCGTGAGTCTGTTTCACGAACTTTTTCATCACACATGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU887771 lncRNA upstream 14560 19849601 ~ 19850354 (+) True LOC110531693
TU887739 lncRNA upstream 99198 19765207 ~ 19765716 (+) True G779138
TU887738 lncRNA upstream 100774 19763928 ~ 19764140 (+) True G779137
TU887684 lncRNA upstream 157967 19636308 ~ 19706947 (+) True G779083
TU887652 lncRNA upstream 269501 19595188 ~ 19595413 (+) True G779052
TU887799 lncRNA downstream 2444 19874487 ~ 19874811 (+) True G779189
TU887822 lncRNA downstream 44348 19916391 ~ 19918384 (+) False G779212
TU887823 lncRNA downstream 44348 19916391 ~ 19918384 (+) True G779212
TU887852 lncRNA downstream 76118 19948161 ~ 19948382 (+) True G779227
TU887893 lncRNA downstream 129710 20001753 ~ 20002034 (+) True G779266
XM_036987527.1 mRNA upstream 11194 19825712 ~ 19853720 (+) False LOC110531693
XM_036987528.1 mRNA upstream 11194 19825712 ~ 19853720 (+) False LOC110531693
XM_021615013.2 mRNA upstream 40375 19817663 ~ 19824539 (+) False LOC110531694
XM_021615014.2 mRNA upstream 40375 19817668 ~ 19824539 (+) False LOC110531694
LOC110532967 mRNA upstream 47511 19807717 ~ 19817403 (+) True LOC110532967
XM_021615017.2 mRNA downstream 4178 19876221 ~ 19914138 (+) False LOC110531697
XM_021615018.2 mRNA downstream 4178 19876221 ~ 19914138 (+) False LOC110531697
XM_021615019.2 mRNA downstream 4178 19876221 ~ 19914138 (+) False LOC110531697
XM_021615020.2 mRNA downstream 4178 19876221 ~ 19914138 (+) False LOC110531697
XM_021615023.2 mRNA downstream 4178 19876221 ~ 19914138 (+) False LOC110531697
TU887666 other upstream 40308 19817688 ~ 19824606 (+) False LOC110531694
TU887667 other upstream 40308 19817688 ~ 19824606 (+) True LOC110531694
TU885868 other upstream 1207340 18656331 ~ 18657574 (+) True LOC110531664
TU885818 other upstream 1364896 18499614 ~ 18500018 (+) True G777396
TU885567 other upstream 1756432 18108019 ~ 18108482 (+) True G777165
TU887801 other downstream 4225 19876268 ~ 19892447 (+) True LOC110531697
TU887900 other downstream 137473 20009516 ~ 20022036 (+) False LOC110531703
TU887902 other downstream 137473 20009516 ~ 20023468 (+) False LOC110531703
TU887922 other downstream 167568 20039611 ~ 20040283 (+) True G779291
TU887946 other downstream 207393 20079436 ~ 20082054 (+) True LOC110531706

Expression Profile