RNA id: TU887974


Basic Information

Item Value
RNA id TU887974
length 201
lncRNA type intronic
GC content 0.42
exon number 1
gene id G779342
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 20122720 ~ 20122920 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acctgacagagctcaagaggatctgcagagaagaatgggagaaactccccaaatacaggtgtgccaagcttgtagcttcatacccaagaagactcaaggctgtaatcgctgccaaagttgcttcaacaaagtactgattaaaggggtctgaatacttatgtaaatgtgatatttcagtttcaaatgttgaatacattggcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU887972 lncRNA upstream 9775 20112717 ~ 20112945 (+) True G779340
TU887971 lncRNA upstream 11793 20110707 ~ 20110927 (+) True G779339
TU887968 lncRNA upstream 14710 20106107 ~ 20108010 (+) True G779336
TU887967 lncRNA upstream 16965 20105391 ~ 20105755 (+) True G779335
TU887966 lncRNA upstream 17639 20104762 ~ 20105081 (+) True G779334
TU887976 lncRNA downstream 1115 20124035 ~ 20124348 (+) True G779344
TU887982 lncRNA downstream 11454 20134374 ~ 20134811 (+) True G779350
TU887983 lncRNA downstream 12644 20135564 ~ 20138117 (+) True G779351
TU887984 lncRNA downstream 15357 20138277 ~ 20144835 (+) True G779352
TU888044 lncRNA downstream 83706 20206626 ~ 20206840 (+) True G779404
XM_021615037.2 mRNA upstream 40636 20079382 ~ 20082084 (+) False LOC110531706
XM_036987533.1 mRNA upstream 40636 20079413 ~ 20082084 (+) False LOC110531706
XM_036987531.1 mRNA upstream 102291 20009183 ~ 20020429 (+) False LOC110531703
XR_005053202.1 mRNA upstream 176198 19942675 ~ 19946522 (+) True LOC110533004
XM_021615027.2 mRNA upstream 183518 19920323 ~ 19939202 (+) True LOC110531699
LOC110532969 mRNA downstream 43675 20166595 ~ 20173950 (+) True LOC110532969
XM_036987537.1 mRNA downstream 63807 20186727 ~ 20211238 (+) False LOC110531712
XM_036987538.1 mRNA downstream 66910 20189830 ~ 20211238 (+) False LOC110531712
XM_036987541.1 mRNA downstream 116837 20239757 ~ 20247172 (+) True LOC110532972
XM_021615047.2 mRNA downstream 157154 20280074 ~ 20282985 (+) True LOC110531716
TU887946 other upstream 40666 20079436 ~ 20082054 (+) True LOC110531706
TU887922 other upstream 82437 20039611 ~ 20040283 (+) True G779291
TU887902 other upstream 99252 20009516 ~ 20023468 (+) False LOC110531703
TU887900 other upstream 100684 20009516 ~ 20022036 (+) False LOC110531703
TU887801 other upstream 230273 19876268 ~ 19892447 (+) True LOC110531697
TU888672 other downstream 978659 21101579 ~ 21102271 (+) True G779964
TU892294 other downstream 2921087 23044007 ~ 23047045 (+) False G783405
TU892315 other downstream 2982551 23105471 ~ 23108039 (+) True gba3
TU893055 other downstream 3642785 23765705 ~ 23779501 (+) True LOC110531760
TU893030 other downstream 3679666 23802586 ~ 23804137 (+) True LOC110531761

Expression Profile