RNA id: TU892294


Basic Information

Item Value
RNA id TU892294
length 2756
RNA type TUCP
GC content 0.52
exon number 2
gene id G783405
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 23044007 ~ 23067530 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCTGGAAGCATTGGATATCCTTTGCCGAGTTCTAAACACACATTTGGGGAAGCAATTGACTATTAATATCGGATCTCTGCGTGATTTCAAAGCAGATTGTATCCGCCCGTTGGTCGACTTGATTAGCTCAAGAAAGAAAACAGAAAAGTGTCAACCTCAAGTTAACTTCCTAACAGATGGGATCGACTCCTTGAAACCTCTGTCATTATTTGAAGCTCACTCTCTTGACTGGAGGGAATCACTGAAGCCAACACTAATCAAGCCATAACTGCTCAATACATTATTCAAAGGCCGTATTACAGATTGTCACTTTCAAGATGGCCGGGTAATACATCTCTGCCTGCCTGAAATGTGCTTTGTATTGCATCATTAGCATAAACATTCAAGTGATGTCTTTACTTTCTTTGCTGTGTCCTTCGTGGCTTCGAAAGTTAGTCTTTTTTTAATGAATCCCATCTGGACATTCTTTTTACATGACCTTCACACAAAAGTTGAATAAAAGGACAGATTGATTCGGTATAGGTGCAGTATGTCAAACAAATGACTGTGAAAACGTATTGTGAACATTTAGGGCAGACCCTCCAGCATGGATTGCCCCTAGGCCCTATACGGGGATGACTAATAAACAGATTAAGACCAGTACATGATAACTGACAATTGGATGCATCTAGCAGACTAAATGATGGCAATCCATCCCTCTGCGACACATTGTGCGGTAAAGTACAGCTCAGTCGTcactcctccccactctctcctaaCAGATATATGCAGCAATATAAAACACTGATGGTCTgctacagagaggggagaggtataGAGGTGAAGATGCACTGCACTAATGATCCTCTCATTGCCGACAGTGACTCTCGCTGTCAAATCACTGCAGGCGGTGCAAGCCAGCGGACCCCTTGAGCAAGTCAGTGGTTCCTTGAGCTTGTAAAAATAGACCGTTTATAAAATGTCTCCTACAGAAACTGATGAGTGGCATCCAAAACACACACTTTCACAAACTCAAAACAGTGAGACTATTTATCCCGATACATTTttctttttaaattaaaaaaaaataattgtacaGAAATCTAAAAAGCAACAATAGTATAAAATAAAATTTCACAGTTGAAGGGTAGAGCATGTGATATGCAGTCTTTGGTGCAGAAAACATTCGCTACACGGTAGTTTCGTGTTTCCATAGGCCAGTCTTTATGTTGGCCGAGCTCAAGCTCTCTGTGTTGATTAAAGGCATGTTCTGCCCGTTGTCTTTGAGCGTGCCGTTTTGTATAGCCAAGTTGAGCCCGTACGATTTGGGCTGGCCCTCCACCAGTTCTGTGTTATTGGGCTGCTTTACGCTACTACTGCTTTTACTCGTAACCGAAGCAGCAGTCCCAACCCCCTCACTTTCTCCACCTGATCCTACTATTGTTCCTACACTACCACTTCCAACTCCTCTGACAGCCCCGTTGCCCAGGGTGCTAGTGCTGCCCCCTCCCTTGCCGGCATAGCGCGAGCGTCGGGGCAGGGATGTGCTGGCGTCGCTGCTGTCCTGTTGCATCTGGCTCTGGAGGCGCTCTCTGTATGCCATGTAGGCTGCCCGTCGGCTGCTCCGTGCCTGCTGACTGTCGTGGTGTTCGTGGCGATGCCGCCTGTGGGGGGTGCTCTGCACGCTGCTGTCCACGCTGGTGGGCACATCATAGGCGTACTCGCGCAGCACCGTGAGTCGGCTGGCCCGGTGGGCCCGCGCCCTGTTCTTGTGGTGCCGGCCCGCGTGTCCATTGGTGGCGGCGATgggattgttgttgttgttgacgggCCGGAACTGCACCTCCACAGGAGCCACGTGCATCTTGATCTCGTTGTCCACAGAGTGCTCAGTCAGGCTGTTGTCCTGCAAGGCTGCGCCATTAGCCAGCGCTGGAAGGGGTAGTAGGGGCAGGGACTTGTTCTGCGCCGCCTCTGCATGCAGATTGGTCAGTTTACTTCCCTGAGCGGAGTTTCGCATGCTGGGGACACTCTTATTGGTGCAGGATGACTCAGCGCTGCTGTGGGCACACTTGACTGCATCGCCATTGCCCCTACCAATCGACCCAGCCGCGGAGGCCGTGGATGTCCCCGGCAGCGGCAGCAGGGCGTCCTCTTGCGCAGAGTATGCCCGTCTCCCAGGGCAACAGGCCTGAGCCCAGTGGTGCCTCATGTCCTGGCGGTTGACGCAGTGGTGCGCCATTAGAAAGCCACCCAGGGCCAGCGCCACCACGCCAAACAGGCAGGAGAACACCAGGTCGGCCGGCCTCTCCTGGGACACGGCCATGGCACCAAACACCCACAGCGCAGCGTAGAGCCCAAGAGCTGCGGCTGCGCCCAGGAGCTGCACCGCGAATGTATGCTCGTTCTCCAAGGCCAACAGAGACACGGCGTGGGGAGCCAAAACTGTGGAGGACGAGGCGtcgtggaggtggaggagggtggCTGGGACATCTCCGGCCTCGCTGCCTGCTACCGCCAGTCGCCGCTGCTCCTCGGCGGGCTCTTTGAGTTCGTAGCGGCGCTCAGGGTGGCGTCGCAGCTGGAGGAGGATGCTAAGGAAATACATGCAGTCCACGAAGACGATGAAGCTGACAGGGCCGAAGAAGGCCCCCAGGCTGGGCTCCCACGCCATCCAGcaactgagacacacacagagggaaagGCATCAGTACAAACAgtaaatatttatgtaaatgtggtacACACGCACATTATCATTCACACAAATGTAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU892285 lncRNA upstream 3787 23039895 ~ 23040220 (+) True G783396
TU891813 lncRNA upstream 74237 22909215 ~ 22969770 (+) True G782941
TU891737 lncRNA upstream 195814 22823068 ~ 22848193 (+) True G782868
TU891691 lncRNA upstream 276603 22767205 ~ 22767404 (+) True G782825
TU891690 lncRNA upstream 277521 22766253 ~ 22766486 (+) True G782824
TU892302 lncRNA downstream 6990 23054035 ~ 23057049 (+) True G783410
TU892484 lncRNA downstream 187739 23234784 ~ 23263612 (+) True G783582
TU892764 lncRNA downstream 394492 23441537 ~ 23441873 (+) True G783847
TU892782 lncRNA downstream 414865 23461910 ~ 23462140 (+) True G783865
TU892783 lncRNA downstream 415655 23462700 ~ 23462961 (+) True G783866
XM_021615146.2 mRNA upstream 32481 23010685 ~ 23011526 (+) True LOC110531753
XM_021615139.2 mRNA upstream 287009 22728099 ~ 22756998 (+) True sec24d
XR_005053443.1 mRNA upstream 376111 22666376 ~ 22667896 (+) False LOC118966179
XR_005053444.1 mRNA upstream 376111 22666376 ~ 22667896 (+) True LOC118966179
XM_036987567.1 mRNA upstream 853704 21595032 ~ 22190303 (+) False LOC110531736
XM_021615149.2 mRNA downstream 58128 23105173 ~ 23111380 (+) False gba3
XM_036987597.1 mRNA downstream 58158 23105203 ~ 23111380 (+) False gba3
XM_021615148.2 mRNA downstream 58163 23105208 ~ 23111380 (+) False gba3
XM_021615158.2 mRNA downstream 689254 23736299 ~ 23749171 (+) True LOC110531759
XM_021615159.2 mRNA downstream 718230 23765275 ~ 23780276 (+) False LOC110531760
TU888672 other upstream 1941736 21101579 ~ 21102271 (+) True G779964
TU887946 other upstream 2961953 20079436 ~ 20082054 (+) True LOC110531706
TU887922 other upstream 3003724 20039611 ~ 20040283 (+) True G779291
TU887902 other upstream 3020539 20009516 ~ 20023468 (+) False LOC110531703
TU887900 other upstream 3021971 20009516 ~ 20022036 (+) False LOC110531703
TU892315 other downstream 58426 23105471 ~ 23108039 (+) True gba3
TU893055 other downstream 718660 23765705 ~ 23779501 (+) True LOC110531760
TU893030 other downstream 755541 23802586 ~ 23804137 (+) True LOC110531761
TU893032 other downstream 787119 23834164 ~ 23839114 (+) True LOC110531763
TU893234 other downstream 1035211 24082256 ~ 24087326 (+) True hacd4

Expression Profile