RNA id: TU893322


Basic Information

Item Value
RNA id TU893322
length 1690
lncRNA type read_through
GC content 0.39
exon number 3
gene id G784366
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 24191617 ~ 24272071 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgtgtggttcgATTGGATGGaaaaaccacaaaaaaaaaatttttttttgttttatctTAAAGTATTAAGCAGTAACAAACCTGTAACTGATATACAAAGCAGAGTtccaaataataacaataacattaTTAATAATAGTAATTAAATTACACTTTCTGTGGCACGTTTACAAAACAGAACAAACATTTCTAACCCGTTATATGGCACTAACAGTTATCATGCATTTTGAGTTCCACATGTAACCACAAACCTCACAAGAATGGTCAAACATGCTAAATCTGACTGTGTGCACTTACAAGTGCATGTTAAAAATATGATTCCTTTTCCATCTCAGATAGTTAAATGTTTCAATTATAAAATAAGTTGAAGGCATATAAAGCATTATCATGGTGTTAATTTAATGAATGCCGATATACGTTTCCAGTATATATTCACTAAGCGCACTACATTTAAAAACAGGTCTCCGTAGCCAAGGCATTCAATTCATTTATTCATTCCTTTGTTTCATTTTATAAAACATGCATAGGCAGACACTTTCagttgattgtttttttttttacacaatatAGGTTCTTTATGTTTACTTTGTTCGCAATACTTTAAAAAGAGAAAAATGAACACTCACAGAATCCCAGCAAGCCACAATAAAATCTATATtcccaaaaaacaacaaaaacatatttgCAAATAATATATAAATGTAAATTCCAGTTATGAAACTCCCCAAAAAATAGGTATTCATCACCAAGGTAATAATTTGCCATTTTCCAGAAATCTGGGTCAAAAGCACACACCAAATGAACCTGAGGTAAGCATAATCTGTACAAAACCATAAAACTTTAAATTTTTGGGGCATTTAAACAATGTTGCAACATTCTTTTTAAGACTGCCTAATTTATTTCAGAGCTATTTTATAAGAGTAGCaaaaaaagttattaataaatagTCCTTACTTAATTTGTACACCCTtatatgttaaaaacatgttttttttaatgttttgccCTTTTTAGTGCTGTATTTTGTAAACGTACAATAGTTAGTAAGAAGTTACACAAAATTTCCATATCCAGTAAAAccgggctctccaaccctgttcctggagagcaaccgtcctgtaggttttcactgcAACCCTAATCAAGCgtacctgattctaataattagctggttgataagctgaatcaggttagagTAGTTACAATtggggttggagcgaaaatctacaggagggtagcttttcaggaacagggttggagggcccTGCAGTAAAATGAGCTAGGGGCTTTcataaattctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctcgtctcagaATCAAGCACGTCATCACCAGCTTCGAGGAGGCCAAGGGCCTGAAAAAGTGAACGAGCAATAACTTTCCGTAGTTCGACCCACCCTGGTCGCCACAGACTGCCACCACCAGCCGTGGTGGAGCGTGCCCCTTCACTGGATGTTGCTGCTGTCCTTGGCGTCTGTGCCATTGGTCTCCGAGGACAGAGCCTTGTTGAGGGAGTTGAGGCTGGCGTCTGAGGGGAGGCCGTCCCGCCTCGGGGGCATCCGCTCGTTGATGCGGTCCAGGCCCTTGGCCTCCGCAAAGCTGGTGATTTTGTGCTGGGGCGAGAAGCCCTTGATgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU893339 lncRNA upstream 18254 24173142 ~ 24173363 (+) True G784382
TU893220 lncRNA upstream 150133 24038627 ~ 24041484 (+) True G784271
TU893226 lncRNA upstream 165605 24025802 ~ 24026012 (+) True G784277
TU893218 lncRNA upstream 173476 24017904 ~ 24018141 (+) True G784269
TU893211 lncRNA upstream 197228 23994189 ~ 23994389 (+) True G784262
TU893400 lncRNA downstream 3973 24276044 ~ 24278695 (+) True G784437
TU894015 lncRNA downstream 150932 24423003 ~ 24423272 (+) True G784980
TU894030 lncRNA downstream 159884 24431955 ~ 24432190 (+) True G784995
TU894056 lncRNA downstream 174794 24446865 ~ 24447152 (+) True G785021
TU894061 lncRNA downstream 179729 24451800 ~ 24452072 (+) True G785026
XM_021615175.2 mRNA upstream 104277 24077880 ~ 24087340 (+) False hacd4
XM_021615177.2 mRNA upstream 104277 24077880 ~ 24087340 (+) False hacd4
XM_021615169.2 mRNA upstream 177780 23995226 ~ 24013837 (+) True LOC110531767
XR_005053208.1 mRNA upstream 204276 23976530 ~ 23987341 (+) False LOC110531768
XM_036987619.1 mRNA upstream 276993 23886777 ~ 23914624 (+) True tspan5a
XM_021615194.2 mRNA downstream 97758 24369829 ~ 24403607 (+) False LOC110531780
XM_021615196.2 mRNA downstream 97760 24369831 ~ 24403607 (+) True LOC110531780
XM_021615198.2 mRNA downstream 184587 24456658 ~ 24471390 (+) False LOC110531781
XM_021615197.2 mRNA downstream 184587 24456658 ~ 24484458 (+) False LOC110531781
XR_005053211.1 mRNA downstream 205531 24477602 ~ 24483989 (+) True LOC110531781
TU893234 other upstream 104291 24082256 ~ 24087326 (+) True hacd4
TU893032 other upstream 352503 23834164 ~ 23839114 (+) True LOC110531763
TU893030 other upstream 387480 23802586 ~ 23804137 (+) True LOC110531761
TU893055 other upstream 412116 23765705 ~ 23779501 (+) True LOC110531760
TU892315 other upstream 1083578 23105471 ~ 23108039 (+) True gba3
TU894183 other downstream 310316 24582387 ~ 24582877 (+) True G785138
TU894522 other downstream 658280 24930351 ~ 24952096 (+) True LOC110531788
TU895266 other downstream 1255602 25527673 ~ 25532277 (+) True LOC110531825
TU895278 other downstream 1273160 25545231 ~ 25546967 (+) True G786091
TU895142 other downstream 1440926 25712997 ~ 25742909 (+) True G785962

Expression Profile