RNA id: TU894183



Basic Information


Item Value
RNA id TU894183
length 491
RNA type TUCP
GC content 0.41
exon number 1
gene id G785138
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 24582387 ~ 24582877 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


atacaggaccattctggaagaaaacctgatggagtctgcaaaagacctgagactgggacggagatttgtcttccaacaagacaatgatccaaaacataaagcaaaatctacaatggaatggttcaaaaataaacatatccaggtgttagaatggccaagtcaaagtccagacctgaatccaatcgagaatctgtggaaagaactgaaaactgctgttcacaaatgctccccatccaacctcactgagctcgagctgttttgcaaggaggaatgggaaaaaatttcagtctctcgatgtgcaaaactgatagagacataccccaagcgacttacagctgtaatcgcagcaaaaggtggcgctacaaactattaacttaagggggctgaataattttgcacgcccaatttttcagtttttgatttgttaaaaaggtttgaaatatccaataaatgtcgttccacttcatgattgtgtcccacttgttgttgat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU894070 lncRNA upstream 96838 24485101 ~ 24485549 (+) True G785033
TU894083 lncRNA upstream 106323 24475761 ~ 24476064 (+) True G785046
TU894061 lncRNA upstream 130315 24451800 ~ 24452072 (+) True G785026
TU894056 lncRNA upstream 135235 24446865 ~ 24447152 (+) True G785021
TU894030 lncRNA upstream 150197 24431955 ~ 24432190 (+) True G784995
TU894236 lncRNA downstream 70681 24653558 ~ 24653869 (+) True G785182
TU894255 lncRNA downstream 122573 24705450 ~ 24771803 (+) True G785196
TU894263 lncRNA downstream 190886 24773763 ~ 24818004 (+) True G785198
TU894341 lncRNA downstream 226837 24809714 ~ 24810262 (+) True G785262
TU894502 lncRNA downstream 241740 24824617 ~ 24824840 (+) True G785404
XM_021615197.2 mRNA upstream 97929 24456658 ~ 24484458 (+) False LOC110531781
XR_005053211.1 mRNA upstream 98398 24477602 ~ 24483989 (+) True LOC110531781
XM_021615198.2 mRNA upstream 110997 24456658 ~ 24471390 (+) False LOC110531781
XM_021615194.2 mRNA upstream 178780 24369829 ~ 24403607 (+) False LOC110531780
XM_021615196.2 mRNA upstream 178780 24369831 ~ 24403607 (+) True LOC110531780
XM_021615206.2 mRNA downstream 18457 24601334 ~ 24624296 (+) True LOC110531785
XM_021615217.2 mRNA downstream 137148 24720025 ~ 24726878 (+) False LOC110531793
XM_021615220.2 mRNA downstream 138256 24721133 ~ 24725940 (+) False LOC110531793
XM_021615218.2 mRNA downstream 138260 24721137 ~ 24726878 (+) True LOC110531793
XM_021615216.2 mRNA downstream 152788 24735665 ~ 24745178 (+) False LOC110531798
TU893234 other upstream 495061 24082256 ~ 24087326 (+) True hacd4
TU893032 other upstream 743273 23834164 ~ 23839114 (+) True LOC110531763
TU893030 other upstream 778250 23802586 ~ 23804137 (+) True LOC110531761
TU893055 other upstream 802886 23765705 ~ 23779501 (+) True LOC110531760
TU892315 other upstream 1474348 23105471 ~ 23108039 (+) True gba3
TU894522 other downstream 347474 24930351 ~ 24952096 (+) True LOC110531788
TU895266 other downstream 944796 25527673 ~ 25532277 (+) True LOC110531825
TU895278 other downstream 962354 25545231 ~ 25546967 (+) True G786091
TU895142 other downstream 1130120 25712997 ~ 25742909 (+) True G785962
TU895436 other downstream 1375207 25958084 ~ 25958867 (+) True G786218

Expression Profile