RNA id: TU895100



Basic Information


Item Value
RNA id TU895100
length 221
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G785930
representative False

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 25269424 ~ 25269834 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctctgggactatcacagtgcaggtgcatttatacagagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagta

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU895055 lncRNA upstream 41321 25227817 ~ 25228103 (+) True G785886
TU895020 lncRNA upstream 66114 25203088 ~ 25203310 (+) True G785851
TU894990 lncRNA upstream 86699 25182450 ~ 25182725 (+) True G785825
TU894958 lncRNA upstream 105230 25159312 ~ 25164194 (+) True G785793
TU894857 lncRNA upstream 126297 25137843 ~ 25143127 (+) True G785695
TU895107 lncRNA downstream 5761 25275405 ~ 25275691 (+) True G785934
TU895113 lncRNA downstream 14122 25283766 ~ 25284033 (+) True G785940
TU895123 lncRNA downstream 22889 25292533 ~ 25292819 (+) True G785949
TU895125 lncRNA downstream 24420 25294064 ~ 25295094 (+) True G785950
TU895184 lncRNA downstream 50749 25320393 ~ 25320681 (+) True G786004
XM_021615237.2 mRNA upstream 71839 25194781 ~ 25197585 (+) True LOC110531807
XM_021615236.2 mRNA upstream 161199 25103853 ~ 25108225 (+) True LOC110531806
trnaa-ugc-31 mRNA upstream 242783 25026571 ~ 25026641 (+) True trnaa-ugc-31
XM_036987662.1 mRNA upstream 251979 24971751 ~ 25017445 (+) False LOC110532977
XM_036987668.1 mRNA downstream 45718 25315362 ~ 25324106 (+) False LOC118966019
XM_036987667.1 mRNA downstream 45815 25315459 ~ 25324101 (+) True LOC118966019
XM_021615242.2 mRNA downstream 54355 25323999 ~ 25339758 (+) False LOC110531811
XR_002474762.2 mRNA downstream 97721 25367365 ~ 25369664 (+) True LOC110531816
LOC110533008 mRNA downstream 126635 25396279 ~ 25397954 (+) True LOC110533008
TU894522 other upstream 317328 24930351 ~ 24952096 (+) True LOC110531788
TU894183 other upstream 686547 24582387 ~ 24582877 (+) True G785138
TU893234 other upstream 1182098 24082256 ~ 24087326 (+) True hacd4
TU893032 other upstream 1430310 23834164 ~ 23839114 (+) True LOC110531763
TU893030 other upstream 1465287 23802586 ~ 23804137 (+) True LOC110531761
TU895266 other downstream 258029 25527673 ~ 25532277 (+) True LOC110531825
TU895278 other downstream 275587 25545231 ~ 25546967 (+) True G786091
TU895142 other downstream 443353 25712997 ~ 25742909 (+) True G785962
TU895436 other downstream 688440 25958084 ~ 25958867 (+) True G786218
TU895770 other downstream 1143468 26413112 ~ 26413532 (+) True G786496

Expression Profile