RNA id: TU895276


Basic Information

Item Value
RNA id TU895276
length 269
lncRNA type sense_over
GC content 0.54
exon number 2
gene id G786089
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 25537524 ~ 25543652 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGTTTCCTAGGAACACAGAGCGAAGGCTCCAGTGGTGTTCTGCCCCCATCTGACAAAGTCCTGACCAGCAGTGGATCCCCAGCACCTAACGTTTGTTCCGCAGCAAGCACTTCACCCACAACATGTTTGACCTCACGGGCCAGATGGTCAGACTTAGGGGCCAGATGGTCAGACTGAGGGGCCAGATGGTCAGACTGAGGGACCATACCGTACCCTCAGTCTTCAACTTCCGCCAGAGGAGGAAGGTAGGTATACAATCCAAAAACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU895249 lncRNA upstream 50879 25486412 ~ 25486645 (+) True G786068
TU895196 lncRNA upstream 127144 25408603 ~ 25410380 (+) True LOC110531817
TU895158 lncRNA upstream 200156 25336682 ~ 25337368 (+) True LOC110531811
TU895185 lncRNA upstream 216395 25320871 ~ 25321129 (+) True G786005
TU895184 lncRNA upstream 216843 25320393 ~ 25320681 (+) True G786004
TU895280 lncRNA downstream 3520 25547172 ~ 25547776 (+) True LOC118966182
TU895298 lncRNA downstream 30543 25574195 ~ 25577299 (+) True G786109
TU895329 lncRNA downstream 76425 25620077 ~ 25620295 (+) True G786133
TU895330 lncRNA downstream 98160 25641812 ~ 25642049 (+) True G786134
TU895153 lncRNA downstream 117029 25660681 ~ 25662373 (+) True LOC110531830
XM_036986934.1 mRNA upstream 1351 25532430 ~ 25536173 (+) True LOC118936682
XM_021615266.2 mRNA upstream 4832 25525371 ~ 25532692 (+) False LOC110531825
XM_036987679.1 mRNA upstream 14007 25508544 ~ 25523517 (+) True LOC110531824
XM_036987675.1 mRNA upstream 86410 25446153 ~ 25451114 (+) False LOC110531823
XM_036987676.1 mRNA upstream 86410 25446153 ~ 25451114 (+) False LOC110531823
XR_005053449.1 mRNA downstream 3453 25547105 ~ 25547900 (+) False LOC118966182
XM_036987688.1 mRNA downstream 60109 25603761 ~ 25629568 (+) False zbtb4
XM_036987694.1 mRNA downstream 60109 25603761 ~ 25629568 (+) False zbtb4
XM_036987687.1 mRNA downstream 63953 25607605 ~ 25629568 (+) False zbtb4
XM_036987691.1 mRNA downstream 63953 25607605 ~ 25629568 (+) False zbtb4
TU895266 other upstream 5247 25527673 ~ 25532277 (+) True LOC110531825
TU894522 other upstream 585428 24930351 ~ 24952096 (+) True LOC110531788
TU894183 other upstream 954647 24582387 ~ 24582877 (+) True G785138
TU893234 other upstream 1450198 24082256 ~ 24087326 (+) True hacd4
TU893032 other upstream 1698410 23834164 ~ 23839114 (+) True LOC110531763
TU895278 other downstream 1579 25545231 ~ 25546967 (+) True G786091
TU895142 other downstream 169345 25712997 ~ 25742909 (+) True G785962
TU895436 other downstream 414432 25958084 ~ 25958867 (+) True G786218
TU895770 other downstream 869460 26413112 ~ 26413532 (+) True G786496
TU896328 other downstream 1835680 27379332 ~ 27379664 (+) True G787022

Expression Profile