RNA id: TU896815


Basic Information

Item Value
RNA id TU896815
length 745
lncRNA type antisense_over
GC content 0.45
exon number 1
gene id G787440
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 25677949 ~ 25678801 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGTCCTCAAGAATTAGGCAGTTGAATCTATTTGATGCAATCTAACTAACGTGATAAAGATAcccccatcaaaatccgtcagtttaaACTATAGATATCTGGGGTGGAACGCGGCAGAGCAACAGCCCTGATTTTCAGACCAATCGGTGGTGTTCTACGCGCAACGTTTACGGTGAATAGGCGGGGCCCTACGCGCAGCGCGTACTCTGTGTATAGGCAGAGGCGGCACTGACTACAACCCCAAAATCGCGGACACTGTGTGCCTTTGTGCAAAGATAGAGTCGTAGACATCCCACTTTGGTTTCCTCATAAAGTTCTTCCACAGTGCTTGAATTGTTTACTTGAGAGTACCTCCATCTGATTTCTCGATGATAGTCCTCCAGTTGTGTGTTTTTCTTTGAAAGTCCATTTGGGAAAAACATTTCCTCTGCCATTACTTTGATTTCCTCAACAGATTTCTTCTTGTCAACATAGAGGTGTCTTGTACCGCCACCGTTTACTGTCCTGACTTGCTTGAACTCTTTCCCCTTTTCATTGAAGTCCATCCAGCCTAGTTCAATTATTCTCTGTTTCTTCTTGGCATTAGTATTCCCCAACAATCCAGTTTTTAATCGTGTGGTTTGTTTATCCCTAACAGACCCTAATCTGCCTTTCAAGCTCTCTGTCATGGCATCCATGTAATTGGCTTGGCTGCAAAGTGTGGATAGCCCGTCTCCATACTCTGACAAATCACTGTCCGCCATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU896807 lncRNA downstream 15009 25662746 ~ 25662962 (-) True G787433
TU896806 lncRNA downstream 15892 25660739 ~ 25662079 (-) True G787432
TU896801 lncRNA downstream 29366 25648233 ~ 25648605 (-) True G787427
TU896798 lncRNA downstream 33378 25644310 ~ 25644593 (-) True G787424
TU896684 lncRNA downstream 36854 25635629 ~ 25641117 (-) True G787313
TU896840 lncRNA upstream 44299 25723014 ~ 25723285 (-) True G787464
TU896858 lncRNA upstream 72159 25750874 ~ 25751511 (-) True G787480
TU896688 lncRNA upstream 79872 25758587 ~ 25762162 (-) True G787317
TU896866 lncRNA upstream 94115 25772830 ~ 25773044 (-) True G787488
TU896874 lncRNA upstream 104971 25783686 ~ 25783888 (-) True G787496
XM_036987684.1 mRNA downstream 74673 25586530 ~ 25603298 (-) True polr2a
XM_036987683.1 mRNA downstream 95723 25570616 ~ 25582248 (-) True LOC110531827
XM_036987680.1 mRNA downstream 97124 25570616 ~ 25580847 (-) False LOC110531827
XM_021615267.2 mRNA downstream 113080 25554016 ~ 25564891 (-) True LOC110531826
XM_021615262.2 mRNA downstream 193750 25451118 ~ 25484221 (-) True LOC110531822
XM_021615280.2 mRNA upstream 34256 25712971 ~ 25732992 (-) False LOC110531833
XM_021615281.2 mRNA upstream 34256 25712971 ~ 25742689 (-) False LOC110531833
XM_021615282.2 mRNA upstream 34256 25712971 ~ 25742721 (-) True LOC110531833
LOC110531837 mRNA upstream 105218 25783933 ~ 25785181 (-) True LOC110531837
XM_036987709.1 mRNA upstream 187275 25865990 ~ 26218916 (-) False LOC110531840
TU896757 other downstream 154459 25522038 ~ 25523512 (-) False G787386
TU896529 other downstream 320155 25355354 ~ 25357816 (-) True LOC110531812
TU896576 other downstream 374280 25294189 ~ 25303691 (-) True trmt44
TU896572 other downstream 386500 25290915 ~ 25291471 (-) True G787211
TU894726 other downstream 712697 24963072 ~ 24965274 (-) True G785578
TU896721 other upstream 196720 25875435 ~ 25894404 (-) True G787350
TU896702 other upstream 204021 25882736 ~ 25930052 (-) True G787331
TU896717 other upstream 246649 25925364 ~ 25955174 (-) True G787346
TU896731 other upstream 778985 26457700 ~ 26458029 (-) False LOC110531840
TU897562 other upstream 1243197 26921912 ~ 26922402 (-) True G788162

Expression Profile