RNA id: TU896840


Basic Information

Item Value
RNA id TU896840
length 225
lncRNA type intronic
GC content 0.38
exon number 2
gene id G787464
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 25723014 ~ 25723285 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTAATTCCATTGATtcattattaagtgattaaaactcagTTCTGTTACCAAATCAGTAATGAAATTACTGCAATTGAACTGGCAACAATGGGAAATTATAGTAGTCACAAACTACAGTTGTGTCACCTGcaactgtcctcccttccactggcatactgttatgttcagctcatgactgtttttttttaccctcCTTCtcactttccctctttctctctgccgct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU896814 lncRNA downstream 44213 25677971 ~ 25678801 (-) False G787440
TU896816 lncRNA downstream 44299 25677949 ~ 25678715 (-) False G787440
TU896815 lncRNA downstream 44299 25677971 ~ 25678715 (-) True G787440
TU896807 lncRNA downstream 60052 25662746 ~ 25662962 (-) True G787433
TU896806 lncRNA downstream 60935 25660739 ~ 25662079 (-) True G787432
TU896858 lncRNA upstream 27589 25750874 ~ 25751511 (-) True G787480
TU896688 lncRNA upstream 35302 25758587 ~ 25762162 (-) True G787317
TU896866 lncRNA upstream 49545 25772830 ~ 25773044 (-) True G787488
TU896874 lncRNA upstream 60401 25783686 ~ 25783888 (-) True G787496
TU896879 lncRNA upstream 69554 25792839 ~ 25794712 (-) True G787499
XM_036987684.1 mRNA downstream 119716 25586530 ~ 25603298 (-) True polr2a
XM_036987683.1 mRNA downstream 140766 25570616 ~ 25582248 (-) True LOC110531827
XM_036987680.1 mRNA downstream 142167 25570616 ~ 25580847 (-) False LOC110531827
XM_021615267.2 mRNA downstream 158123 25554016 ~ 25564891 (-) True LOC110531826
XM_021615262.2 mRNA downstream 238793 25451118 ~ 25484221 (-) True LOC110531822
LOC110531837 mRNA upstream 60648 25783933 ~ 25785181 (-) True LOC110531837
XM_036987709.1 mRNA upstream 142705 25865990 ~ 26218916 (-) False LOC110531840
XM_036987702.1 mRNA upstream 142705 25865990 ~ 26900452 (-) False LOC110531840
XM_036987703.1 mRNA upstream 142705 25865990 ~ 26900452 (-) False LOC110531840
XM_036987704.1 mRNA upstream 142705 25865990 ~ 26900452 (-) False LOC110531840
TU896757 other downstream 199502 25522038 ~ 25523512 (-) False G787386
TU896529 other downstream 365198 25355354 ~ 25357816 (-) True LOC110531812
TU896576 other downstream 419323 25294189 ~ 25303691 (-) True trmt44
TU896572 other downstream 431543 25290915 ~ 25291471 (-) True G787211
TU894726 other downstream 757740 24963072 ~ 24965274 (-) True G785578
TU896721 other upstream 152150 25875435 ~ 25894404 (-) True G787350
TU896702 other upstream 159451 25882736 ~ 25930052 (-) True G787331
TU896717 other upstream 202079 25925364 ~ 25955174 (-) True G787346
TU896731 other upstream 734415 26457700 ~ 26458029 (-) False LOC110531840
TU897562 other upstream 1198627 26921912 ~ 26922402 (-) True G788162

Expression Profile