RNA id: TU896880


Basic Information

Item Value
RNA id TU896880
length 1562
lncRNA type antisense_over
GC content 0.38
exon number 1
gene id G787500
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 25830720 ~ 25832281 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTTATATTTTATTTGGTCTCGTTTTCTTTGAGTTTTTCCTTTATGTATTTCACAGGTTAAACCCAATTAAAATAGTcaagaacaaaaaaaaacaaggacacaCATTCTCTCACATACACGCCTCTGACGCACAAACAACAAAATAGTTTTTGATTAGGCCCAGCCCAGTGCGAAAtttcacaaacacacaacacaatgaacgACAACATCATCTCAAAGCCTAACGACAAAACAACCTAGCTCATACGAGCAGAAACCAAATCTGGAAGTTGTATTGCAGTATTTGAGGCAACGCAACATTTCATCACATAGCCCACTGTTTCCAAATCCAGGGTTAAGAAACACTGACATAACATACGCttttgaaacaaacaaaaaatgattCAGAAAGGAATGTTGAACAGAACACAAAGCAAATAGATAGTCTagaaagacagggaggaggtcacaAAATGTCCACCGTTGTCAAATCTTGTTTCAGTGAAACTTGAAGACCTCATCTATGTCTAGGTAGATAGCAGTTTTATGCACAGTATGGGTGCTATCGAAGGGATCTCAGTTTGGGATCTTGTTCAATGTCAGGAGGATATCTCTCAACTATATTTTTGATGATCTAACTATAGTATAAAAGTAGTCTTTGATTTTCTGTTACAAAGAAATACTGGGATGCCTAGAGAGATGTGTGTGATACAAAACCATTTTGGTTCAATTTGGAAGCAGGAATGTTAAGATTCGCCCCTGGTGAAGCACCCATACTGTTTTTATCTTAAATACTCCAGTGAAGACCTAAAGTAAAAcacaaaaaatacaaattaaaaacCAGGTCGCCCAAAAAATATGAAGCAATCAAGCATCCTAATGTAGACTCTGTCTCTGGCCCTCTTCAAAATGTTTTCAGTCCAGTGTGTAAAAAAAAGGCCCATTATAAATATATCCTCTCATTTGTCCCCCTATTTAAAACTCCATTGTAAGCTGATGGGAGCCGGTCACAGCAGGAAGGAGTGCTATACAGTACTGTGATTCTCTGAGTGGGAGTCCCACATGTTCTTCCACAAAGTCCCAGGGAATTGCACCGTCCTCTTTTAAAATCGGCTGCTTGTTCTTTGATGAATTTGAATTCAAAACTTTATTGAAGCAGCACCTGAAATAGACCACCCACTACAAATACCCCCAAATACCTTGAATAACAAaggtttttttcttttcttttttcttacCTAGGTTGTTCCGATAGCAACGTTTAACCTTGTCAGCATGTAATGAGGTCTATTCAAATTCAGCAAAGGGCAAGGAAAAGAGTATTCAGACACTTAATTGATCTGATTCAGTCTAATTAGTGTTGACTGGATAATGTTCTCTTTCCATCAACGTCTTAAAATATTGACAGTTCCATAAGAGAGAGATTCAAATTCTGTGCTCCGTATGCTTTGTGTACAGGGATCGTGTCTTTGGCACAGGGTTGATTCAAAATAAAAGTAGTACTTCAGGTGAAACAATTAGTCGTTTAGACCTTGGAACTAAATAACCACACAGATTGGTCCATGCATCGTTTCCTCACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU896879 lncRNA downstream 36008 25792839 ~ 25794712 (-) True G787499
TU896874 lncRNA downstream 46832 25783686 ~ 25783888 (-) True G787496
TU896866 lncRNA downstream 57676 25772830 ~ 25773044 (-) True G787488
TU896688 lncRNA downstream 68558 25758587 ~ 25762162 (-) True G787317
TU896858 lncRNA downstream 79209 25750874 ~ 25751511 (-) True G787480
TU896923 lncRNA upstream 22973 25855254 ~ 25855776 (-) True G787538
TU896928 lncRNA upstream 26763 25859044 ~ 25859476 (-) True G787543
TU896929 lncRNA upstream 31215 25863496 ~ 25863897 (-) True G787544
TU896691 lncRNA upstream 42043 25874324 ~ 25885123 (-) True G787320
TU896711 lncRNA upstream 44246 25876527 ~ 25926579 (-) True G787340
LOC110531837 mRNA downstream 45539 25783933 ~ 25785181 (-) True LOC110531837
XM_021615282.2 mRNA downstream 87999 25712971 ~ 25742721 (-) True LOC110531833
XM_021615281.2 mRNA downstream 88031 25712971 ~ 25742689 (-) False LOC110531833
XM_021615280.2 mRNA downstream 97728 25712971 ~ 25732992 (-) False LOC110531833
XM_036987684.1 mRNA downstream 227422 25586530 ~ 25603298 (-) True polr2a
XM_036987709.1 mRNA upstream 33709 25865990 ~ 26218916 (-) False LOC110531840
XM_036987702.1 mRNA upstream 33709 25865990 ~ 26900452 (-) False LOC110531840
XM_036987703.1 mRNA upstream 33709 25865990 ~ 26900452 (-) False LOC110531840
XM_036987704.1 mRNA upstream 33709 25865990 ~ 26900452 (-) False LOC110531840
XM_036987705.1 mRNA upstream 33709 25865990 ~ 26900452 (-) False LOC110531840
TU896757 other downstream 307208 25522038 ~ 25523512 (-) False G787386
TU896529 other downstream 472904 25355354 ~ 25357816 (-) True LOC110531812
TU896576 other downstream 527029 25294189 ~ 25303691 (-) True trmt44
TU896572 other downstream 539249 25290915 ~ 25291471 (-) True G787211
TU894726 other downstream 865446 24963072 ~ 24965274 (-) True G785578
TU896721 other upstream 43154 25875435 ~ 25894404 (-) True G787350
TU896702 other upstream 50455 25882736 ~ 25930052 (-) True G787331
TU896717 other upstream 93083 25925364 ~ 25955174 (-) True G787346
TU896731 other upstream 625419 26457700 ~ 26458029 (-) False LOC110531840
TU897562 other upstream 1089631 26921912 ~ 26922402 (-) True G788162

Expression Profile