RNA id: TU895402


Basic Information

Item Value
RNA id TU895402
length 375
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G786205
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 25837163 ~ 25837537 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attaaaaccagttgagtctatgggggcgctatttcattattggataaaaaaaacgtgcccgttttaagcgcaatattttgtcacgaaaagatgctcgactatgcatataattgacagctttggaaagaaaacagtctgacgtttccaaaactgcaaagatattatctgtgagtgccacagaactcatgctacaggcgaaaccaagatgaaacttcaaacaggaaatgagcagaatttctgaagctctgttttccattgtctccttatatggctgtgaatgcaccacgaacgagcctgccctttctgtcgtttcttcaagatgtctgcagcattgtgacgtatttataggcatatcattggaagattggccataag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU895143 lncRNA upstream 4883 25828693 ~ 25832280 (+) True LOC110531839
TU895162 lncRNA upstream 10702 25824251 ~ 25826461 (+) False LOC110531839
TU895386 lncRNA upstream 53849 25782222 ~ 25783314 (+) True G786189
TU895384 lncRNA upstream 55214 25781740 ~ 25781949 (+) True G786188
TU895379 lncRNA upstream 61945 25774811 ~ 25775218 (+) True G786183
TU895420 lncRNA downstream 36990 25874527 ~ 25885097 (+) False G786218
TU895431 lncRNA downstream 36990 25874527 ~ 25944044 (+) False G786218
TU895447 lncRNA downstream 36990 25874527 ~ 25943010 (+) False G786218
TU895452 lncRNA downstream 36990 25874527 ~ 25929840 (+) False G786218
TU895454 lncRNA downstream 36990 25874527 ~ 25944044 (+) False G786218
XM_021615288.2 mRNA upstream 4876 25792766 ~ 25832287 (+) False LOC110531839
XM_036987701.1 mRNA upstream 4876 25792772 ~ 25832287 (+) False LOC110531839
XM_036987699.1 mRNA upstream 45968 25786096 ~ 25791195 (+) False LOC110531838
XM_021615285.2 mRNA upstream 45968 25786100 ~ 25791195 (+) False LOC110531838
XM_021615286.2 mRNA upstream 45968 25786106 ~ 25791195 (+) False LOC110531838
XM_036987710.1 mRNA downstream 1358984 27196521 ~ 27213187 (+) True alpk1
XM_021615294.2 mRNA downstream 1376582 27214119 ~ 27220387 (+) True epdl1
XR_002474765.2 mRNA downstream 1419066 27256603 ~ 27267492 (+) True LOC110531847
XM_021615311.2 mRNA downstream 1503161 27340698 ~ 27375922 (+) False LOC110531852
XM_021615314.2 mRNA downstream 1503180 27340717 ~ 27374100 (+) False LOC110531852
TU895142 other upstream 94254 25712997 ~ 25742909 (+) True G785962
TU895278 other upstream 290196 25545231 ~ 25546967 (+) True G786091
TU895266 other upstream 304886 25527673 ~ 25532277 (+) True LOC110531825
TU894522 other upstream 885067 24930351 ~ 24952096 (+) True LOC110531788
TU894183 other upstream 1254286 24582387 ~ 24582877 (+) True G785138
TU895436 other downstream 120547 25958084 ~ 25958867 (+) True G786218
TU895770 other downstream 575575 26413112 ~ 26413532 (+) True G786496
TU896328 other downstream 1541795 27379332 ~ 27379664 (+) True G787022
TU896363 other downstream 1648257 27485794 ~ 27487523 (+) True taf6l
TU899899 other downstream 3502444 29339981 ~ 29342203 (+) False rbpjb

Expression Profile