RNA id: TU896923


Basic Information

Item Value
RNA id TU896923
length 523
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G787538
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 25855254 ~ 25855776 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgatgtcacaggaaggccataaagatcatgaaggacaacaaccacccgagccactgcctgttcaccccgctatcatccagaaggcgaggtcagtacaggtgcatcaaagctgggaccgagagactgaaaaacagcttctatctcaaggccatcagactgttacacatccaccactaacattgagtggctgctgccaacacactgactcaacttcagccattttaataatgggaattgatgggaaatgatgtaaaatatatcactagccactttaaacaatgctacctaatataatgtttacataccctacattattaatctcatatgtatatgtatatactgtactctatcatctactgcatctttatgtaatacatgtatcactagccactttaactatgccactttgtttacatactcatctcatatgtatatactgcactcaataccatctactgtatcttgcctatgccgctctgtaccatcactcattcatatatctttatgtacatattctttatcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU896880 lncRNA downstream 22973 25830720 ~ 25832281 (-) True G787500
TU896879 lncRNA downstream 60542 25792839 ~ 25794712 (-) True G787499
TU896874 lncRNA downstream 71366 25783686 ~ 25783888 (-) True G787496
TU896866 lncRNA downstream 82210 25772830 ~ 25773044 (-) True G787488
TU896688 lncRNA downstream 93092 25758587 ~ 25762162 (-) True G787317
TU896928 lncRNA upstream 3268 25859044 ~ 25859476 (-) True G787543
TU896929 lncRNA upstream 7720 25863496 ~ 25863897 (-) True G787544
TU896691 lncRNA upstream 18548 25874324 ~ 25885123 (-) True G787320
TU896711 lncRNA upstream 20751 25876527 ~ 25926579 (-) True G787340
TU896716 lncRNA upstream 20958 25876734 ~ 25878901 (-) True G787345
LOC110531837 mRNA downstream 70073 25783933 ~ 25785181 (-) True LOC110531837
XM_021615282.2 mRNA downstream 112533 25712971 ~ 25742721 (-) True LOC110531833
XM_021615281.2 mRNA downstream 112565 25712971 ~ 25742689 (-) False LOC110531833
XM_021615280.2 mRNA downstream 122262 25712971 ~ 25732992 (-) False LOC110531833
XM_036987684.1 mRNA downstream 251956 25586530 ~ 25603298 (-) True polr2a
XM_036987709.1 mRNA upstream 10214 25865990 ~ 26218916 (-) False LOC110531840
XM_036987702.1 mRNA upstream 10214 25865990 ~ 26900452 (-) False LOC110531840
XM_036987703.1 mRNA upstream 10214 25865990 ~ 26900452 (-) False LOC110531840
XM_036987704.1 mRNA upstream 10214 25865990 ~ 26900452 (-) False LOC110531840
XM_036987705.1 mRNA upstream 10214 25865990 ~ 26900452 (-) False LOC110531840
TU896757 other downstream 331742 25522038 ~ 25523512 (-) False G787386
TU896529 other downstream 497438 25355354 ~ 25357816 (-) True LOC110531812
TU896576 other downstream 551563 25294189 ~ 25303691 (-) True trmt44
TU896572 other downstream 563783 25290915 ~ 25291471 (-) True G787211
TU894726 other downstream 889980 24963072 ~ 24965274 (-) True G785578
TU896721 other upstream 19659 25875435 ~ 25894404 (-) True G787350
TU896702 other upstream 26960 25882736 ~ 25930052 (-) True G787331
TU896717 other upstream 69588 25925364 ~ 25955174 (-) True G787346
TU896731 other upstream 601924 26457700 ~ 26458029 (-) False LOC110531840
TU897562 other upstream 1066136 26921912 ~ 26922402 (-) True G788162

Expression Profile