RNA id: TU896691


Basic Information

Item Value
RNA id TU896691
length 804
lncRNA type intronic
GC content 0.35
exon number 2
gene id G787320
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 25874324 ~ 25885123 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agagagatgagaaaacactgacagtaaatattttagagagagatgagaaaacactgacagtaaatatgttagagagagatgagaaaacactgacagtatatatgttagagagagatgagaaaacactgacagtaaatatgttagagagagatgagaaaacaatgacagtatatatggtagagagagatgataaaacactgacagtatatatgttagagagagatgagaaaacactgacagtaaatatgttagagagagatgagaaaacactgacagaaaATTGTAGGGagatgagatttttttttaattaaatattttagagagaaatgagaaaacgctcacagtaaatatgttagagagagatgagaaaacactgacagtatattgtagggagagatgagaaaacactgacagtaaatatgttagagagagatgagaaaacactgacagttaaTTTGTCTGAGAGAGATGAGaacacactgacagtatattgtagggagagatgagaaaacactgacagtaaatatgttagagagagatgagaaaacactgacagttaatatgttagagagatgagaacactgacagtaaatatgttagagagaaatgagaacACTGACAGTGATTGAGAGGGAATAGAATAGAGTGAGAGAAAAATGAAGGCAAAGATGAGAAAAAATAATGAGAGGAAAAGACGATAGGTTGATATTTCATGCGTTGACTCAGCCCGTGATCAAACAGCGCTCTTGTGAGGTAGAAACAGTAGTCTGCCGAACTAGCCAACACGAGTGAGAGTTCATGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU896929 lncRNA downstream 10427 25863496 ~ 25863897 (-) True G787544
TU896928 lncRNA downstream 14848 25859044 ~ 25859476 (-) True G787543
TU896923 lncRNA downstream 18548 25855254 ~ 25855776 (-) True G787538
TU896880 lncRNA downstream 42043 25830720 ~ 25832281 (-) True G787500
TU896879 lncRNA downstream 79612 25792839 ~ 25794712 (-) True G787499
TU896689 lncRNA upstream 1165 25886288 ~ 25947076 (-) True G787318
TU896694 lncRNA upstream 4433 25889556 ~ 25948250 (-) True G787323
TU896729 lncRNA upstream 6259 25891382 ~ 25896649 (-) True G787358
TU896709 lncRNA upstream 7424 25892547 ~ 25898057 (-) True G787338
TU896735 lncRNA upstream 7564 25892687 ~ 25894203 (-) True G787364
LOC110531837 mRNA downstream 89143 25783933 ~ 25785181 (-) True LOC110531837
XM_021615282.2 mRNA downstream 131603 25712971 ~ 25742721 (-) True LOC110531833
XM_021615281.2 mRNA downstream 131635 25712971 ~ 25742689 (-) False LOC110531833
XM_021615280.2 mRNA downstream 141332 25712971 ~ 25732992 (-) False LOC110531833
XM_036987684.1 mRNA downstream 271026 25586530 ~ 25603298 (-) True polr2a
trnaa-ugc-32 mRNA upstream 407706 26292829 ~ 26292904 (-) True trnaa-ugc-32
XM_036987711.1 mRNA upstream 1231832 27116955 ~ 27196040 (-) False LOC110531842
XM_036987712.1 mRNA upstream 1231832 27116955 ~ 27196041 (-) False LOC110531842
XM_036987713.1 mRNA upstream 1231832 27116955 ~ 27196041 (-) False LOC110531842
XR_005053217.1 mRNA upstream 1231832 27116955 ~ 27196041 (-) False LOC110531842
TU896757 other downstream 350812 25522038 ~ 25523512 (-) False G787386
TU896529 other downstream 516508 25355354 ~ 25357816 (-) True LOC110531812
TU896576 other downstream 570633 25294189 ~ 25303691 (-) True trmt44
TU896572 other downstream 582853 25290915 ~ 25291471 (-) True G787211
TU894726 other downstream 909050 24963072 ~ 24965274 (-) True G785578
TU896717 other upstream 40241 25925364 ~ 25955174 (-) True G787346
TU896731 other upstream 572577 26457700 ~ 26458029 (-) False LOC110531840
TU897562 other upstream 1036789 26921912 ~ 26922402 (-) True G788162
TU897571 other upstream 1047918 26933041 ~ 26933401 (-) True G788171
TU897572 other upstream 1050004 26935127 ~ 26935506 (-) True G788172

Expression Profile