RNA id: TU895442


Basic Information

Item Value
RNA id TU895442
length 2110
lncRNA type intronic
GC content 0.32
exon number 4
gene id G786218
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 25874527 ~ 25958867 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctaccatatttactgtcagttttttctcatccctctctaacatttttactgtcagtgtttagtcatctctttctaacatatttactCTCAGTGTTCtcatctctaacatatttacagtcagtgttctcatcactctctaacatatttacagtcagcgTTTTCTCaactctctctaacatatttactgtcagtgttttctcatctctctctctaacatatttactgtcagtgttttctcctctctctctctaacatatttactgtcattgttttatcatctctctctaacatatttactgtcagtgttttctcatctctctctctaacatatttactgtcagcattttctcatttctctctaacatatttaatttaaaaGAATTCTCATCTCCCTACAAAAAACTGTCAgcgttttctcatctctctctaacatatttactgtctgttttttctcctctctctaacatagttactgtcagtgttttatcatttctctctaacatatttactgtcagtgttctcatctctaacatatttactctcagttttttctcatctctctctaacatatttactgtcagtgttttctcatctatctctaacatatttactgtcagtgttttctcatctctctaacatatttactgtcagtgttttctcatctctctctctaacatatttacagtcagtattttaccatctctctctaacatatttactgtcagtgttttctcatctctctctaacatatttactgtcagtgttttctcatctctatctaacatatttaattaaaaaaaattctCATCTCCCTACAATATACTGCCAgtgttttctcatttctctctaacatatttaatttaaaaaaattctcaTCTCCCTACAATATACTGCCAGTGTTTTcttatctctctctaacatatttactgtcagtgttttctcatctctctctaacatatttactgtcagtgttttctcatctctctctaacatatttactgtcagtgttttctcatctctatctaacatatttactgtcagtgttttctcatctatctctaacatatttactgtcagtgttttctcatctctctaacatatttactgtcagtgttttctcatctctctctctaacatatttacagtcagtattttaccatctctctctaacatatttactgtcagtgttttctcatctctctctctaacatatttactgtcagtgttttctcatctctctctaacatatttactgtcagtgttttatcatctctctctaacatatttactgtcagtgttttatcatttctctctaacatatttaattaaaaaaaattctCATCTCCCTACAATATACTGCCAgtgttttctcatttctctctaacatatttaatttaaaaaaattctcaTCTCCCTACAATATACTGCCAGTGTTTTcttatctctctctaacatatttactgtcagtgttttctcatctctctctaacatatttactgtcagtgttttctcatctctctctaacatatttactgtcagtgttttctcatctctatctaacatatttactgtcagtgttctcatctctctctaacatatttactgtcagtgttttctcatctctctctaacatatttactgtcagtgttttctcatctctctctaacatatttactgtcagtgttttctcatctctctctctctaacatatttacagtcagtattttaccatctctctctaacatatttactgtcagtgttttctcatctctctctaacatatttactgtcagtgttttctcatctctctctaacatatttacagtcagtattttaccatctctctctaacatatttactgtcagtattttatcatctctctctaacatatttactgtcagtgatttatcatctctctctctaacatatttactgtcagtgttttctcatctctctctaacatatatactgtcagtgttttctcatctctctctaacatatttactgtcagtgttttctcatctctctctaacatatatactgtcagtgttttctcatctctctctaacatatttactgtcagtgttttctcatctctctctaaaatatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU895402 lncRNA upstream 38861 25837163 ~ 25837537 (+) True G786205
TU895143 lncRNA upstream 44118 25828693 ~ 25832280 (+) True LOC110531839
TU895162 lncRNA upstream 49937 25824251 ~ 25826461 (+) False LOC110531839
TU895386 lncRNA upstream 93084 25782222 ~ 25783314 (+) True G786189
TU895384 lncRNA upstream 94449 25781740 ~ 25781949 (+) True G786188
TU895422 lncRNA downstream 171 25885268 ~ 25892442 (+) False G786218
TU895462 lncRNA downstream 171 25885268 ~ 25944044 (+) False G786218
TU895475 lncRNA downstream 171 25885268 ~ 25905422 (+) False G786218
TU895429 lncRNA downstream 1241 25886338 ~ 25932503 (+) False G786218
TU895460 lncRNA downstream 1241 25886338 ~ 25916066 (+) False G786218
XM_021615288.2 mRNA upstream 44111 25792766 ~ 25832287 (+) False LOC110531839
XM_036987701.1 mRNA upstream 44111 25792772 ~ 25832287 (+) False LOC110531839
XM_021615285.2 mRNA upstream 85203 25786100 ~ 25791195 (+) False LOC110531838
XM_036987710.1 mRNA downstream 1311424 27196521 ~ 27213187 (+) True alpk1
XM_021615294.2 mRNA downstream 1329022 27214119 ~ 27220387 (+) True epdl1
XR_002474765.2 mRNA downstream 1371506 27256603 ~ 27267492 (+) True LOC110531847
XM_021615311.2 mRNA downstream 1455601 27340698 ~ 27375922 (+) False LOC110531852
XM_021615314.2 mRNA downstream 1455620 27340717 ~ 27374100 (+) False LOC110531852
TU895142 other upstream 133489 25712997 ~ 25742909 (+) True G785962
TU895278 other upstream 329431 25545231 ~ 25546967 (+) True G786091
TU895266 other upstream 344121 25527673 ~ 25532277 (+) True LOC110531825
TU894522 other upstream 924302 24930351 ~ 24952096 (+) True LOC110531788
TU894183 other upstream 1293521 24582387 ~ 24582877 (+) True G785138
TU895436 other downstream 72987 25958084 ~ 25958867 (+) True G786218
TU895770 other downstream 528015 26413112 ~ 26413532 (+) True G786496
TU896328 other downstream 1494235 27379332 ~ 27379664 (+) True G787022
TU896363 other downstream 1600697 27485794 ~ 27487523 (+) True taf6l
TU899899 other downstream 3454884 29339981 ~ 29342203 (+) False rbpjb

Expression Profile