RNA id: TU895444


Basic Information

Item Value
RNA id TU895444
length 2036
lncRNA type intronic
GC content 0.32
exon number 7
gene id G786218
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 25874527 ~ 25958867 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctaccatatttactgtcagttttttctcatccctctctaacatttttactgtcagtgtttagtcatctctttctaacatatttactCTCAGTGTTCtcatctctaacatatttacagtcagtgttctcatcactctctaacatatttacagtcagcgTTTTCTCaactctctctaacatatttactgtcagtgttttctcatctctctctctaacatatttactgtcagtgttttctcctctctctctctaacatatttactgtcattgttttatcatctctctctaacatatttactgtcagtgttttctcatctctctctctaacatatttactgtcagcattttctcatttctctctaacatatttaatttaaaaGAATTCTCATCTCCCTACAAAAAACTGTCAgcgttttctcatctctctctaacatatttactgtctgttttttctcctctctctaacatagttactgtcagtgttttatcatttctctctaacatatttactgtcagtgttctcatctctaacatatttactctcagttttttctcatctctctctaacatatttactgtcagtgttttctcatctatctctaacatatttactgtcagtgttttctcatctctctaacatatttactgtcagtgttttctcatctctctctctaacatatttacagtcagtattttaccatctctctctaacatatttactgtcagtgttttctcatctctctctaacatatttactgtcagtgttttctcatctctatctaacatatttaattaaaaaaaattctCATCTCCCTACAATATACTGCCAgtgttttctcatttctctctaacatatttaatttaaaaaaattctcaTCTCCCTACAATATACTGCCAGTGTTTTcttatctctctctaacatatttactgtcagtgttttctcatctctctctaacatatttactgtcagtgttttctcatctctctctaacatatttactgtcagtgttttctcatctctatctaacatatttactgtcagtgttttctcatctatctctaacatatttactgtcagtgttttctcatctctctaacatatttactgtcagtgttttctcatctctctctctaacatatttacagtcagtattttaccatctctctctaacatatttactgtcagtgttttctcatctctctctctaacatatttactgtcagtgttttctcatctctctctaacatatttactgtcagtgttttatcatctctctctaacatatttactgtcagtgttttatcatttctctctaacatatttactgtcagtgttctcatctctctctaacatatttactgtcagtgttttctcatctctctctaacatatttactgtcagtgttttctcatctctctctaacatatttactgtcagtgttttctcatctctctctctctaacatatttacagtcagtattttaccatctctctctaacatatttactgtcagtgttttctcatctctctctaacatatttactgtcagtgttttctcatctctctctaacatatttacagtcagtattttaccatctctctctaacatatttactgtcagtgttttatcatctctctctctaacatatttactgtcagtgtatTCTCATCTCTCACTAATATATTTAAtatcagtgttttctcatctctccctacaatatactgtcagtgttttctcctctctctaacatatttactgtgagcgttttctcatttctctctaaaatatttaattaaaaaaaaatctcatctCCCTACAATtttctgtcagtgttttctcatctctctctaacatatttactgtcagtgttttctcatctctctctaacatatatactgtcagttgttttctcatctctccctacaatatactgtcagtgttttctcatctctctaacatatttattgtcagtgttttctcatctctctctaacatatatactgtcagtgttttctcatctctctctactatatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU895402 lncRNA upstream 38861 25837163 ~ 25837537 (+) True G786205
TU895143 lncRNA upstream 44118 25828693 ~ 25832280 (+) True LOC110531839
TU895162 lncRNA upstream 49937 25824251 ~ 25826461 (+) False LOC110531839
TU895386 lncRNA upstream 93084 25782222 ~ 25783314 (+) True G786189
TU895384 lncRNA upstream 94449 25781740 ~ 25781949 (+) True G786188
TU895531 lncRNA downstream 78321 26029333 ~ 26104028 (+) True G786270
TU895620 lncRNA downstream 235133 26186145 ~ 26188032 (+) True G786354
TU895633 lncRNA downstream 266786 26217798 ~ 26218888 (+) True G786366
TU895634 lncRNA downstream 273212 26224224 ~ 26224434 (+) True G786367
TU895654 lncRNA downstream 305033 26256045 ~ 26256438 (+) True G786387
XM_021615288.2 mRNA upstream 44111 25792766 ~ 25832287 (+) False LOC110531839
XM_036987701.1 mRNA upstream 44111 25792772 ~ 25832287 (+) False LOC110531839
XM_021615285.2 mRNA upstream 85203 25786100 ~ 25791195 (+) False LOC110531838
XM_036987710.1 mRNA downstream 1245509 27196521 ~ 27213187 (+) True alpk1
XM_021615294.2 mRNA downstream 1263107 27214119 ~ 27220387 (+) True epdl1
XR_002474765.2 mRNA downstream 1305591 27256603 ~ 27267492 (+) True LOC110531847
XM_021615311.2 mRNA downstream 1389686 27340698 ~ 27375922 (+) False LOC110531852
XM_021615314.2 mRNA downstream 1389705 27340717 ~ 27374100 (+) False LOC110531852
TU895142 other upstream 133489 25712997 ~ 25742909 (+) True G785962
TU895278 other upstream 329431 25545231 ~ 25546967 (+) True G786091
TU895266 other upstream 344121 25527673 ~ 25532277 (+) True LOC110531825
TU894522 other upstream 924302 24930351 ~ 24952096 (+) True LOC110531788
TU894183 other upstream 1293521 24582387 ~ 24582877 (+) True G785138
TU895436 other downstream 7072 25958084 ~ 25958867 (+) True G786218
TU895770 other downstream 462100 26413112 ~ 26413532 (+) True G786496
TU896328 other downstream 1428320 27379332 ~ 27379664 (+) True G787022
TU896363 other downstream 1534782 27485794 ~ 27487523 (+) True taf6l
TU899899 other downstream 3388969 29339981 ~ 29342203 (+) False rbpjb

Expression Profile