RNA id: TU895448


Basic Information

Item Value
RNA id TU895448
length 325
lncRNA type intronic
GC content 0.33
exon number 3
gene id G786218
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 25874527 ~ 25958867 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctctctctaacatatttactgtcagtgtttctcatttctctctaacttatttaatttcagttttttctcatctctgcctacaatatactgtcagtgttttctcatctctctctaacaaatatactgtcagtgtttcctcatctctctaacaaatttactgtcagtgttttctcatctctctctaacaaatttactgtcagtgttttctcatctctctaacaaatttactgtcagtgttttctcatctctctctaacaaatttactgtcagtgttttctcatctctctaacatatttactgtcagtgttttatcatctctctcta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU895422 lncRNA upstream 577 25885268 ~ 25892442 (+) False G786218
TU895428 lncRNA upstream 1620 25882722 ~ 25891399 (+) False G786218
TU895430 lncRNA upstream 1620 25882722 ~ 25891399 (+) False G786218
TU895456 lncRNA upstream 1620 25883699 ~ 25891399 (+) False G786218
TU895420 lncRNA upstream 7922 25874527 ~ 25885097 (+) False G786218
TU895486 lncRNA downstream 275 25896918 ~ 25917477 (+) True G786227
TU895424 lncRNA downstream 5202 25901845 ~ 25958867 (+) False G786218
TU895425 lncRNA downstream 8356 25904999 ~ 25958867 (+) False G786218
TU895480 lncRNA downstream 9579 25906222 ~ 25927271 (+) True G786222
TU895426 lncRNA downstream 11002 25907645 ~ 25958867 (+) False G786218
XM_021615288.2 mRNA upstream 60732 25792766 ~ 25832287 (+) False LOC110531839
XM_036987701.1 mRNA upstream 60732 25792772 ~ 25832287 (+) False LOC110531839
XM_021615285.2 mRNA upstream 101824 25786100 ~ 25791195 (+) False LOC110531838
XM_036987710.1 mRNA downstream 1299878 27196521 ~ 27213187 (+) True alpk1
XM_021615294.2 mRNA downstream 1317476 27214119 ~ 27220387 (+) True epdl1
XR_002474765.2 mRNA downstream 1359960 27256603 ~ 27267492 (+) True LOC110531847
XM_021615311.2 mRNA downstream 1444055 27340698 ~ 27375922 (+) False LOC110531852
XM_021615314.2 mRNA downstream 1444074 27340717 ~ 27374100 (+) False LOC110531852
TU895142 other upstream 150110 25712997 ~ 25742909 (+) True G785962
TU895278 other upstream 346052 25545231 ~ 25546967 (+) True G786091
TU895266 other upstream 360742 25527673 ~ 25532277 (+) True LOC110531825
TU894522 other upstream 940923 24930351 ~ 24952096 (+) True LOC110531788
TU894183 other upstream 1310142 24582387 ~ 24582877 (+) True G785138
TU895436 other downstream 61441 25958084 ~ 25958867 (+) True G786218
TU895770 other downstream 516469 26413112 ~ 26413532 (+) True G786496
TU896328 other downstream 1482689 27379332 ~ 27379664 (+) True G787022
TU896363 other downstream 1589151 27485794 ~ 27487523 (+) True taf6l
TU899899 other downstream 3443338 29339981 ~ 29342203 (+) False rbpjb

Expression Profile