RNA id: TU895424


Basic Information

Item Value
RNA id TU895424
length 1492
lncRNA type intronic
GC content 0.33
exon number 3
gene id G786218
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 25874527 ~ 25958867 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgttttatcatctctctctgacatttttactgtcagtgttttcacatttctctctaacatatttactgtcagtgttttatcatctctctctaacatatatactgtcagtgttttctcatctctctctaacatatttactgtcagtgttttctcatctctctctaacatatttactgtcagtgttttctcatctctctctaacatatttactgtcagtgttttatcatctctctttaccatatatactgtaagtgttttctcatctctctctaccatatatactgtcagtgttttctcctctctctaacatatttactgtcagtgttttatcatctctctttaccatatatactgtcagtgttttctcatctctctctaccatatatactgtcagtgttttctcctctctctaacatatttactgtcagtgttttatcatctctctttaccatatatactgtcagtgttttctcatctctctctaccatatatactgtcagtgttttctcctctctctaacatatttactgtcattgttttctcatctctctctaacatatttactgtcagtgttttctcatctctctttaacatatttactgtcaatgttttatcatctctctctaactcaattaaatttcatttttttctcatctctctctaacatattaactgtcagtgttttctcatctctctctaacatatttactgtcagtgttttctcatctctctctaccatatttactgtcagggttttctcatctctctctaacatatttactgtcagtgttttctcatctctctctaacatatttactgtcagtgttttctcatctctctctaacatattaactgtcagtgttttctcctctctctaacatatttactgtcagtgttttctcatctctctctctaacatatttactgtcagcgttttctcatctctctctaacatatttactgtcagtgttttctcatctctctctaacatatttactgtcagtgttttctcatctctctataacatatttactgtcagggttttctcatctctctctaacatatttactgtcagtgttttctcatctctctctaacatatttactgtcagcgttttctcatctctctctaccatatttactgtcagtgttttctcatctctctctaccatatttactgtcagtgttttctcatctctctctaccatatttactgtcagtgttttctcatctctctctaacatatatactgtcagtgttttatcatctctctctaacatatttactgtcagtgttttatcatctctctctaacatatttactgtcagtgttttctcatctctctctaacatatttactgtcagtgttttatcatctctctctaacatatttactgtcagtgttttctcatctctctctaacatatttactgtcagtgttttctcatctctctctaccatatttactgtcagcgttttctcatctctctctaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU895446 lncRNA upstream 3820 25883423 ~ 25898025 (+) False G786218
TU895466 lncRNA upstream 5202 25883423 ~ 25896643 (+) False G786218
TU895448 lncRNA upstream 5202 25893019 ~ 25896643 (+) False G786218
TU895433 lncRNA upstream 7818 25881522 ~ 25894027 (+) False G786218
TU895432 lncRNA upstream 7818 25888527 ~ 25894027 (+) False G786218
TU895531 lncRNA downstream 70466 26029333 ~ 26104028 (+) True G786270
TU895620 lncRNA downstream 227278 26186145 ~ 26188032 (+) True G786354
TU895633 lncRNA downstream 258931 26217798 ~ 26218888 (+) True G786366
TU895634 lncRNA downstream 265357 26224224 ~ 26224434 (+) True G786367
TU895654 lncRNA downstream 297178 26256045 ~ 26256438 (+) True G786387
XM_021615288.2 mRNA upstream 69558 25792766 ~ 25832287 (+) False LOC110531839
XM_036987701.1 mRNA upstream 69558 25792772 ~ 25832287 (+) False LOC110531839
XM_021615285.2 mRNA upstream 110650 25786100 ~ 25791195 (+) False LOC110531838
XM_036987710.1 mRNA downstream 1237654 27196521 ~ 27213187 (+) True alpk1
XM_021615294.2 mRNA downstream 1255252 27214119 ~ 27220387 (+) True epdl1
XR_002474765.2 mRNA downstream 1297736 27256603 ~ 27267492 (+) True LOC110531847
XM_021615311.2 mRNA downstream 1381831 27340698 ~ 27375922 (+) False LOC110531852
XM_021615314.2 mRNA downstream 1381850 27340717 ~ 27374100 (+) False LOC110531852
TU895142 other upstream 158936 25712997 ~ 25742909 (+) True G785962
TU895278 other upstream 354878 25545231 ~ 25546967 (+) True G786091
TU895266 other upstream 369568 25527673 ~ 25532277 (+) True LOC110531825
TU894522 other upstream 949749 24930351 ~ 24952096 (+) True LOC110531788
TU894183 other upstream 1318968 24582387 ~ 24582877 (+) True G785138
TU895770 other downstream 454245 26413112 ~ 26413532 (+) True G786496
TU896328 other downstream 1420465 27379332 ~ 27379664 (+) True G787022
TU896363 other downstream 1526927 27485794 ~ 27487523 (+) True taf6l
TU899899 other downstream 3381114 29339981 ~ 29342203 (+) False rbpjb
TU899896 other downstream 3381580 29340447 ~ 29342203 (+) True rbpjb

Expression Profile