RNA id: TU895441


Basic Information

Item Value
RNA id TU895441
length 238
lncRNA type intronic
GC content 0.35
exon number 3
gene id G786218
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 25874527 ~ 25958867 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

catctctgcctacaatatactgtcagtgttttctcatctcgctctaacatatttactgtcagtgttttctcatctctctctaacatatttattgtcagttgtttctcatctctctctaacatatttactgtcagtgttttctcatctctctctagcaTATTTACTGTcggtgttttctcatctctctcaaacatatttactgtcagtgttttctcatctctctctactatatatactg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU895475 lncRNA upstream 6387 25885268 ~ 25905422 (+) False G786218
TU895446 lncRNA upstream 13784 25883423 ~ 25898025 (+) False G786218
TU895466 lncRNA upstream 15166 25883423 ~ 25896643 (+) False G786218
TU895448 lncRNA upstream 15166 25893019 ~ 25896643 (+) False G786218
TU895433 lncRNA upstream 17782 25881522 ~ 25894027 (+) False G786218
TU895461 lncRNA downstream 652 25932717 ~ 25933145 (+) False G786218
TU895488 lncRNA downstream 12967 25945032 ~ 25946326 (+) True G786229
TU895463 lncRNA downstream 15856 25947921 ~ 25958867 (+) False G786218
TU895531 lncRNA downstream 97268 26029333 ~ 26104028 (+) True G786270
TU895620 lncRNA downstream 254080 26186145 ~ 26188032 (+) True G786354
XM_021615288.2 mRNA upstream 79522 25792766 ~ 25832287 (+) False LOC110531839
XM_036987701.1 mRNA upstream 79522 25792772 ~ 25832287 (+) False LOC110531839
XM_021615285.2 mRNA upstream 120614 25786100 ~ 25791195 (+) False LOC110531838
XM_036987710.1 mRNA downstream 1264456 27196521 ~ 27213187 (+) True alpk1
XM_021615294.2 mRNA downstream 1282054 27214119 ~ 27220387 (+) True epdl1
XR_002474765.2 mRNA downstream 1324538 27256603 ~ 27267492 (+) True LOC110531847
XM_021615311.2 mRNA downstream 1408633 27340698 ~ 27375922 (+) False LOC110531852
XM_021615314.2 mRNA downstream 1408652 27340717 ~ 27374100 (+) False LOC110531852
TU895142 other upstream 168900 25712997 ~ 25742909 (+) True G785962
TU895278 other upstream 364842 25545231 ~ 25546967 (+) True G786091
TU895266 other upstream 379532 25527673 ~ 25532277 (+) True LOC110531825
TU894522 other upstream 959713 24930351 ~ 24952096 (+) True LOC110531788
TU894183 other upstream 1328932 24582387 ~ 24582877 (+) True G785138
TU895436 other downstream 26019 25958084 ~ 25958867 (+) True G786218
TU895770 other downstream 481047 26413112 ~ 26413532 (+) True G786496
TU896328 other downstream 1447267 27379332 ~ 27379664 (+) True G787022
TU896363 other downstream 1553729 27485794 ~ 27487523 (+) True taf6l
TU899899 other downstream 3407916 29339981 ~ 29342203 (+) False rbpjb

Expression Profile