RNA id: TU895718


Basic Information

Item Value
RNA id TU895718
length 223
lncRNA type intronic
GC content 0.42
exon number 1
gene id G786444
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 26346208 ~ 26346430 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGACACAGcatgttttacattagttatcttgttgttattagtcccaaacttcagctccattcaacccctcccatctatactccttcaggctagggtctatttttctccacttcctgtctgactgacgtgcccaaagtaaactgcctgttactcaggcccagaagccaggatgtgcatataattggcaccattggatagaaaactatTTGAAGTTGGTAGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU895713 lncRNA upstream 7602 26338256 ~ 26338606 (+) True G786439
TU895702 lncRNA upstream 27303 26318592 ~ 26318905 (+) True G786428
TU895700 lncRNA upstream 29091 26316836 ~ 26317117 (+) True G786426
TU895683 lncRNA upstream 47894 26297935 ~ 26298314 (+) True G786411
TU895681 lncRNA upstream 49514 26296395 ~ 26296694 (+) True G786409
TU895728 lncRNA downstream 10825 26357255 ~ 26357471 (+) True G786454
TU895732 lncRNA downstream 15163 26361593 ~ 26361834 (+) True G786458
TU895740 lncRNA downstream 23373 26369803 ~ 26370023 (+) True G786466
TU895745 lncRNA downstream 30099 26376529 ~ 26377202 (+) True G786471
TU895747 lncRNA downstream 31903 26378333 ~ 26378694 (+) True G786473
XM_021615288.2 mRNA upstream 513921 25792766 ~ 25832287 (+) False LOC110531839
XM_036987701.1 mRNA upstream 513921 25792772 ~ 25832287 (+) False LOC110531839
XM_021615285.2 mRNA upstream 555013 25786100 ~ 25791195 (+) False LOC110531838
XM_036987710.1 mRNA downstream 850091 27196521 ~ 27213187 (+) True alpk1
XM_021615294.2 mRNA downstream 867689 27214119 ~ 27220387 (+) True epdl1
XR_002474765.2 mRNA downstream 910173 27256603 ~ 27267492 (+) True LOC110531847
XM_021615311.2 mRNA downstream 994268 27340698 ~ 27375922 (+) False LOC110531852
XM_021615314.2 mRNA downstream 994287 27340717 ~ 27374100 (+) False LOC110531852
TU895436 other upstream 387341 25958084 ~ 25958867 (+) True G786218
TU895142 other upstream 603299 25712997 ~ 25742909 (+) True G785962
TU895278 other upstream 799241 25545231 ~ 25546967 (+) True G786091
TU895266 other upstream 813931 25527673 ~ 25532277 (+) True LOC110531825
TU894522 other upstream 1394112 24930351 ~ 24952096 (+) True LOC110531788
TU895770 other downstream 66682 26413112 ~ 26413532 (+) True G786496
TU896328 other downstream 1032902 27379332 ~ 27379664 (+) True G787022
TU896363 other downstream 1139364 27485794 ~ 27487523 (+) True taf6l
TU899899 other downstream 2993551 29339981 ~ 29342203 (+) False rbpjb
TU899896 other downstream 2994017 29340447 ~ 29342203 (+) True rbpjb

Expression Profile