RNA id: TU897201



Basic Information


Item Value
RNA id TU897201
length 216
lncRNA type intronic
GC content 0.49
exon number 1
gene id G787810
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 26404697 ~ 26404912 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCATACTGGCAGAGTCAGGAAATGATGAATAGTGTCATTCACTCTATTGCTGCTGGCGTGACGCACACTGAAATCATCCCTGCTAGGGTTGGAACACGACGTGCAACCAACCCAACACTAGATGTCCCCATAACACATGAAGTCGACTGTAGCTCTGAAAGAGGATTGAGAAGAAGTGTTAGTTGTATTCCAGCAGAGGGcacaacacgcacgcac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU897199 lncRNA downstream 1938 26402060 ~ 26402759 (-) True G787808
TU897198 lncRNA downstream 2291 26402060 ~ 26402406 (-) False G787808
TU897192 lncRNA downstream 6424 26398054 ~ 26398273 (-) True G787802
TU897173 lncRNA downstream 34489 26370008 ~ 26370208 (-) True G787783
TU897171 lncRNA downstream 37739 26366757 ~ 26366958 (-) True G787781
TU897206 lncRNA upstream 13432 26418344 ~ 26418578 (-) True G787815
TU897209 lncRNA upstream 20465 26425377 ~ 26426268 (-) False G787818
TU897210 lncRNA upstream 20465 26425377 ~ 26426725 (-) True G787818
TU897211 lncRNA upstream 22732 26427644 ~ 26428292 (-) True G787819
TU897213 lncRNA upstream 26239 26431151 ~ 26431363 (-) True G787821
trnaa-ugc-32 mRNA downstream 111793 26292829 ~ 26292904 (-) True trnaa-ugc-32
XM_036987709.1 mRNA downstream 185781 25865990 ~ 26218916 (-) False LOC110531840
LOC110531837 mRNA downstream 619516 25783933 ~ 25785181 (-) True LOC110531837
XM_021615282.2 mRNA downstream 661976 25712971 ~ 25742721 (-) True LOC110531833
XM_021615281.2 mRNA downstream 662008 25712971 ~ 25742689 (-) False LOC110531833
XM_036987711.1 mRNA upstream 712043 27116955 ~ 27196040 (-) False LOC110531842
XM_036987712.1 mRNA upstream 712043 27116955 ~ 27196041 (-) False LOC110531842
XM_036987713.1 mRNA upstream 712043 27116955 ~ 27196041 (-) False LOC110531842
XR_005053217.1 mRNA upstream 712043 27116955 ~ 27196041 (-) False LOC110531842
XR_005053218.1 mRNA upstream 712043 27116955 ~ 27196041 (-) False LOC110531842
TU896717 other downstream 449523 25925364 ~ 25955174 (-) True G787346
TU896702 other downstream 474645 25882736 ~ 25930052 (-) True G787331
TU896721 other downstream 510293 25875435 ~ 25894404 (-) True G787350
TU896757 other downstream 881185 25522038 ~ 25523512 (-) False G787386
TU896529 other downstream 1046881 25355354 ~ 25357816 (-) True LOC110531812
TU896731 other upstream 52788 26457700 ~ 26458029 (-) False LOC110531840
TU897562 other upstream 517000 26921912 ~ 26922402 (-) True G788162
TU897571 other upstream 528129 26933041 ~ 26933401 (-) True G788171
TU897572 other upstream 530215 26935127 ~ 26935506 (-) True G788172
TU897573 other upstream 531572 26936484 ~ 26936764 (-) True G788173

Expression Profile