RNA id: TU897210


Basic Information

Item Value
RNA id TU897210
length 1065
lncRNA type intronic
GC content 0.44
exon number 4
gene id G787818
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 26425377 ~ 26426725 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcagagggtcagagagataaggagtcagtgggtcagagagagaagagtcagagggtcagagagagaaggagtcagtgggtcagagagagaagagtcagAGGGTCAGAGATtgaaatagtgagagagagagtcagagattgagagagagagagagagagagaaggagtgagagaggagtcagagagagatagagagagagagatagagaggagtcaGATATtgagatagtgagagaggagtcagagagagagaaggagacaggaaTTAGgatagtgagagagaaggagtcaGAGGGTCAGAGattgagatagtgagagagaaggagtcagagggtcagagattgaaatagtgagagagagagtcagagagagaaggagtcagAGGTTGAGATAGTCAGAGAGATAAGGAGTGAGAGataggagtcagagagagagagatagagaggagtcaGATATtgagatagtgagagaggagtcagagagagagaaggagacaggaaTTAGgatagtgagagagaaggagtcaGAGGGTCAGAGATTAagatagtgagagagaaggagttaGAGattgagatagtgagagagagggagttaGAGATTGAGATAGTAaaagagagggtcagagagagagaaggagacagagattgagatagtgagagagagggtcagagagagagaaggaggcatagattgagagtgagagagggtcagagagagagaaggagaaagacattgagatagtgagagagagggtcagagagagagaaggagacagagattgggatagtgagagagagggtcagagagagagagaaccagtggTGATTCCAGATTGTGATGGTGACAATGTTGAATGTTCCATCTCTTTTTAGGTCAGGCAAAGAGAGGGGCTGACTGCACTGTACGGGAAAGAGCTGTTTAGTTCCATAGGCAGCATTTCTTACAACACAATCCTTCCAAGTGTTTGAGTAATGTGTTGGAAATAcaagaacaaaaaaaaacaagagcAATAGTATTTGAAAGTTGGATTATTGATCAAATAAAACCAAAAAGCTTGAAGTCAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU897206 lncRNA downstream 6799 26418344 ~ 26418578 (-) True G787815
TU897201 lncRNA downstream 20465 26404697 ~ 26404912 (-) True G787810
TU897199 lncRNA downstream 22618 26402060 ~ 26402759 (-) True G787808
TU897198 lncRNA downstream 22971 26402060 ~ 26402406 (-) False G787808
TU897192 lncRNA downstream 27104 26398054 ~ 26398273 (-) True G787802
TU897211 lncRNA upstream 919 26427644 ~ 26428292 (-) True G787819
TU897213 lncRNA upstream 4426 26431151 ~ 26431363 (-) True G787821
TU897214 lncRNA upstream 4948 26431673 ~ 26431942 (-) True G787822
TU897215 lncRNA upstream 6564 26433289 ~ 26433662 (-) False G787823
TU897217 lncRNA upstream 6564 26433289 ~ 26433701 (-) True G787823
trnaa-ugc-32 mRNA downstream 132473 26292829 ~ 26292904 (-) True trnaa-ugc-32
XM_036987709.1 mRNA downstream 206461 25865990 ~ 26218916 (-) False LOC110531840
LOC110531837 mRNA downstream 640196 25783933 ~ 25785181 (-) True LOC110531837
XM_021615282.2 mRNA downstream 682656 25712971 ~ 25742721 (-) True LOC110531833
XM_021615281.2 mRNA downstream 682688 25712971 ~ 25742689 (-) False LOC110531833
XM_036987711.1 mRNA upstream 690230 27116955 ~ 27196040 (-) False LOC110531842
XM_036987712.1 mRNA upstream 690230 27116955 ~ 27196041 (-) False LOC110531842
XM_036987713.1 mRNA upstream 690230 27116955 ~ 27196041 (-) False LOC110531842
XR_005053217.1 mRNA upstream 690230 27116955 ~ 27196041 (-) False LOC110531842
XR_005053218.1 mRNA upstream 690230 27116955 ~ 27196041 (-) False LOC110531842
TU896717 other downstream 470203 25925364 ~ 25955174 (-) True G787346
TU896702 other downstream 495325 25882736 ~ 25930052 (-) True G787331
TU896721 other downstream 530973 25875435 ~ 25894404 (-) True G787350
TU896757 other downstream 901865 25522038 ~ 25523512 (-) False G787386
TU896529 other downstream 1067561 25355354 ~ 25357816 (-) True LOC110531812
TU896731 other upstream 30975 26457700 ~ 26458029 (-) False LOC110531840
TU897562 other upstream 495187 26921912 ~ 26922402 (-) True G788162
TU897571 other upstream 506316 26933041 ~ 26933401 (-) True G788171
TU897572 other upstream 508402 26935127 ~ 26935506 (-) True G788172
TU897573 other upstream 509759 26936484 ~ 26936764 (-) True G788173

Expression Profile