RNA id: TU897247



Basic Information


Item Value
RNA id TU897247
length 214
lncRNA type intronic
GC content 0.39
exon number 1
gene id G787852
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 26486762 ~ 26486975 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCTATTAGCAATGCAGTCACGACTCGCATTACATacgttagaacagtggtcacAAACCTTTTTAAAGATTTGACTTtcgcagtcaaaaagcaagctGAGATCTACTGCTCGGATTTTTTTAACCTCACACAAACAGTTTTGTAGGAATAAGTTTTGGGCAGtgggcctaatacattatcacagcatattggctatatgattGGTCTGCCAATAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU897245 lncRNA downstream 1299 26485259 ~ 26485463 (-) True G787850
TU897236 lncRNA downstream 12627 26473834 ~ 26474135 (-) True G787841
TU897224 lncRNA downstream 32934 26453596 ~ 26453828 (-) True G787829
TU897217 lncRNA downstream 53061 26433289 ~ 26433701 (-) True G787823
TU897215 lncRNA downstream 53100 26433289 ~ 26433662 (-) False G787823
TU897257 lncRNA upstream 12504 26499479 ~ 26499738 (-) True G787862
TU897264 lncRNA upstream 22427 26509402 ~ 26509652 (-) True G787869
TU897285 lncRNA upstream 46175 26533150 ~ 26533352 (-) True G787890
TU897291 lncRNA upstream 53150 26540125 ~ 26540337 (-) True G787896
TU897306 lncRNA upstream 72685 26559660 ~ 26615458 (-) True G787910
trnaa-ugc-32 mRNA downstream 193858 26292829 ~ 26292904 (-) True trnaa-ugc-32
XM_036987709.1 mRNA downstream 267846 25865990 ~ 26218916 (-) False LOC110531840
LOC110531837 mRNA downstream 701581 25783933 ~ 25785181 (-) True LOC110531837
XM_021615282.2 mRNA downstream 744041 25712971 ~ 25742721 (-) True LOC110531833
XM_021615281.2 mRNA downstream 744073 25712971 ~ 25742689 (-) False LOC110531833
XM_036987711.1 mRNA upstream 629980 27116955 ~ 27196040 (-) False LOC110531842
XM_036987712.1 mRNA upstream 629980 27116955 ~ 27196041 (-) False LOC110531842
XM_036987713.1 mRNA upstream 629980 27116955 ~ 27196041 (-) False LOC110531842
XR_005053217.1 mRNA upstream 629980 27116955 ~ 27196041 (-) False LOC110531842
XR_005053218.1 mRNA upstream 629980 27116955 ~ 27196041 (-) False LOC110531842
TU896731 other downstream 28733 26457700 ~ 26458029 (-) False LOC110531840
TU896717 other downstream 531588 25925364 ~ 25955174 (-) True G787346
TU896702 other downstream 556710 25882736 ~ 25930052 (-) True G787331
TU896721 other downstream 592358 25875435 ~ 25894404 (-) True G787350
TU896757 other downstream 963250 25522038 ~ 25523512 (-) False G787386
TU897562 other upstream 434937 26921912 ~ 26922402 (-) True G788162
TU897571 other upstream 446066 26933041 ~ 26933401 (-) True G788171
TU897572 other upstream 448152 26935127 ~ 26935506 (-) True G788172
TU897573 other upstream 449509 26936484 ~ 26936764 (-) True G788173
TU897739 other upstream 893187 27380162 ~ 27381289 (-) True LOC110531854

Expression Profile