RNA id: TU897365



Basic Information


Item Value
RNA id TU897365
length 324
lncRNA type intronic
GC content 0.35
exon number 1
gene id G787967
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 26643876 ~ 26644199 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gatttgttaaaaaagtttgaaatatccaataaatgttgttccacgtcatgattgtgtcccacttgttgttgattcttcacaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtattaacaCGGATCTAATTATAGTGGCGTAACAGGACATATTGTATCATACAGTATTTGGTTCCGTAGCGTCATGACAAATTTAGTGTTCCACGTTTCATAAGAATTTCAAACTTAGGCCTAGTTGATTCAATGTCAGAGactctaataa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU897355 lncRNA downstream 11340 26632126 ~ 26632536 (-) True G787957
TU897353 lncRNA downstream 14250 26629400 ~ 26629626 (-) True G787955
TU897344 lncRNA downstream 23978 26619689 ~ 26619898 (-) True G787946
TU897306 lncRNA downstream 28418 26559660 ~ 26615458 (-) True G787910
TU897291 lncRNA downstream 103539 26540125 ~ 26540337 (-) True G787896
TU897370 lncRNA upstream 5039 26649238 ~ 26649462 (-) True G787972
TU897375 lncRNA upstream 9723 26653922 ~ 26654131 (-) True G787977
TU896701 lncRNA upstream 160083 26804282 ~ 26900387 (-) True LOC110531840
TU897570 lncRNA upstream 288040 26932239 ~ 26932621 (-) True G788170
TU897576 lncRNA upstream 310196 26954395 ~ 26954612 (-) True G788176
trnaa-ugc-32 mRNA downstream 350972 26292829 ~ 26292904 (-) True trnaa-ugc-32
XM_036987709.1 mRNA downstream 424960 25865990 ~ 26218916 (-) False LOC110531840
LOC110531837 mRNA downstream 858695 25783933 ~ 25785181 (-) True LOC110531837
XM_021615282.2 mRNA downstream 901155 25712971 ~ 25742721 (-) True LOC110531833
XM_021615281.2 mRNA downstream 901187 25712971 ~ 25742689 (-) False LOC110531833
XM_036987711.1 mRNA upstream 472756 27116955 ~ 27196040 (-) False LOC110531842
XM_036987712.1 mRNA upstream 472756 27116955 ~ 27196041 (-) False LOC110531842
XM_036987713.1 mRNA upstream 472756 27116955 ~ 27196041 (-) False LOC110531842
XR_005053217.1 mRNA upstream 472756 27116955 ~ 27196041 (-) False LOC110531842
XR_005053218.1 mRNA upstream 472756 27116955 ~ 27196041 (-) False LOC110531842
TU896731 other downstream 185847 26457700 ~ 26458029 (-) False LOC110531840
TU896717 other downstream 688702 25925364 ~ 25955174 (-) True G787346
TU896702 other downstream 713824 25882736 ~ 25930052 (-) True G787331
TU896721 other downstream 749472 25875435 ~ 25894404 (-) True G787350
TU896757 other downstream 1120364 25522038 ~ 25523512 (-) False G787386
TU897562 other upstream 277713 26921912 ~ 26922402 (-) True G788162
TU897571 other upstream 288842 26933041 ~ 26933401 (-) True G788171
TU897572 other upstream 290928 26935127 ~ 26935506 (-) True G788172
TU897573 other upstream 292285 26936484 ~ 26936764 (-) True G788173
TU897739 other upstream 735963 27380162 ~ 27381289 (-) True LOC110531854

Expression Profile