RNA id: TU896308


Basic Information

Item Value
RNA id TU896308
length 1318
lncRNA type antisense_over
GC content 0.40
exon number 1
gene id G787002
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 27376152 ~ 27377469 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACAGACATGGTAAACCCAATCGGCGAATGTGTTGCTTTATACGTTATTACCAGCTGTCTGCAAATGACAGCTGAGTCGAGTCAATTTTAGCCATAATTTACCAGAGAACCAGTCAGACAAAATTATTCCGACACTTTTTTTATTACAAGTATCATTGATGACAGAATGCATGTCTCAACAACCTTTCGCCATGTACAGACGAAATGCAGAGCGGATACTTGAAACAGATGAAATTGAAGAAAGATGAGGGACTCGGTCCCAAAATAAAACCGAAGATCATTGCTCGTGTCCTCGCCCAAGCCAACTAAGTACCACCAAAGGGTCATTTTAACGTGCCCCTTATGCACACCGACACAAACATACACGTAAATCATTGCAACAAACAAGGTTTATTCTTATTTATTCAATCACATATTTATATTCTATTCATATTTAAATAATAAGTGCTGAGTCACAAAGCTTTTAACCTTTCTGTGGCCAACGTGGCTCAAAGCCCAGATGTAATAAGTATTTCATCACTCCTTGCCCATTCCCTGCATGCTAAAAAGACCACTGCACAAACTAGGGATGTGTCTGAAAACATTACTGGCTGTCAAATCCTTGCTTCCTCTCTCCTTGTTTCCTCAATTCCTATTGAAGTGCATTAGAGGAGAGGATTCAGGGTCCCTCCTCTGGCCCTGCAATGCCTTTGAGAGGAATTCATGAAACAAGGACGGAGAAAGCACAGGTTTGACTGGTAACAATTTGAGATCCAGCCCACCAATTAAGTTTAGGTTAggttagagaaagagagtggtAATTCAACACTCACGTCCCTCCTCTCCACGTAACTGGAGAAATGCTGCCATCTGGTTCTTTGAGCAAATCAATTAGTCCATGGGTTGTAAATTATTGTTATGTTAAGAGTGTAGTCATTTTCATGCGCTATAACAAGCGAGCGAAAGAGCGAGCACAGATGGAAAATGGACAATCCCTGAGTTGTGCTTTTCCTGGTGGGAGTGATATTTTAAAGATCACTGAAATAAGGGCAACCGAGGTGCTCATTTCATAGGTGGTCAACTTGGCAATTTATTTCCTGACGCTGTTGTAATATTATACTTTTTCTTTTATCACTTTGTTGCATAAACCTTGTAATAGGTGAGTTACTGAAATGGAAATCTTGCATTTGAAATCTTGTATAAATATGCTCTCTTATAAAACGCCCAAGCCATTCCAGGCAATCCCTCCACAATCATGCATGACTTCAGAATTGCCATGCAAAAGGAAATTTACGTGGCATCGTTAACTTTGATCAATGAAGTAGACAAAATGGCCGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU896303 lncRNA upstream 39628 27336264 ~ 27336524 (+) True G786999
TU896282 lncRNA upstream 69215 27305897 ~ 27306937 (+) True G786980
TU896267 lncRNA upstream 83906 27291890 ~ 27292246 (+) True G786968
TU896265 lncRNA upstream 92353 27278687 ~ 27283799 (+) True G786966
TU896264 lncRNA upstream 96131 27278687 ~ 27280021 (+) False G786966
TU896333 lncRNA downstream 7247 27384716 ~ 27384982 (+) True G787027
TU896321 lncRNA downstream 18655 27396124 ~ 27397631 (+) True LOC110531855
TU896322 lncRNA downstream 22314 27399783 ~ 27400279 (+) True G787016
TU896319 lncRNA downstream 22898 27400367 ~ 27401709 (+) True G787013
TU896413 lncRNA downstream 123910 27501379 ~ 27506375 (+) True G787069
XM_021615311.2 mRNA upstream 230 27340698 ~ 27375922 (+) False LOC110531852
XM_021615314.2 mRNA upstream 2052 27340717 ~ 27374100 (+) False LOC110531852
XM_021615313.2 mRNA upstream 2052 27340726 ~ 27374100 (+) False LOC110531852
XM_036987724.1 mRNA upstream 2052 27341688 ~ 27374100 (+) True LOC110531852
XR_002474765.2 mRNA upstream 108660 27256603 ~ 27267492 (+) True LOC110531847
XM_036987727.1 mRNA downstream 11422 27388891 ~ 27399023 (+) False LOC110531855
XM_021615320.2 mRNA downstream 11423 27388892 ~ 27399023 (+) False LOC110531855
XM_021615319.2 mRNA downstream 11428 27388897 ~ 27399023 (+) False LOC110531855
XM_021615318.2 mRNA downstream 11429 27388898 ~ 27399023 (+) False LOC110531855
XM_036987725.1 mRNA downstream 11671 27389140 ~ 27399023 (+) False LOC110531855
TU895770 other upstream 962620 26413112 ~ 26413532 (+) True G786496
TU895436 other upstream 1417285 25958084 ~ 25958867 (+) True G786218
TU895142 other upstream 1633243 25712997 ~ 25742909 (+) True G785962
TU895278 other upstream 1829185 25545231 ~ 25546967 (+) True G786091
TU895266 other upstream 1843875 25527673 ~ 25532277 (+) True LOC110531825
TU896328 other downstream 1863 27379332 ~ 27379664 (+) True G787022
TU896363 other downstream 108325 27485794 ~ 27487523 (+) True taf6l
TU899899 other downstream 1962512 29339981 ~ 29342203 (+) False rbpjb
TU899896 other downstream 1962978 29340447 ~ 29342203 (+) True rbpjb
TU901372 other downstream 2905206 30282675 ~ 30288163 (+) False LOC110531891

Expression Profile