RNA id: TU898790


Basic Information

Item Value
RNA id TU898790
length 296
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G789311
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 28330019 ~ 28330314 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caagaactgcagcactgctgggtttttcacactcaacagtttcctgtgtgtatcaagaatggtccagcacccaaaggacatccagccaacttgacacaactgtggaacgctttcgacaccttgtagagtccatgccccaacgaattgtggctgttctgagggcaaaaggggatttgcaactcaatattaggaaggtgttccgaATGTTTGCAATACTCAGCGTATGTACAGGCCAGGCTATAGGACCAGGTTTTTTTTTTGATCACATGACCTGAACAGGAAATACTCCAGACCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU898789 lncRNA upstream 144 28329672 ~ 28329875 (+) True G789310
TU898764 lncRNA upstream 34978 28294428 ~ 28295041 (+) True G789289
TU898767 lncRNA upstream 35995 28293724 ~ 28294024 (+) True G789292
TU898429 lncRNA upstream 44557 28285251 ~ 28285462 (+) True G788992
TU898188 lncRNA upstream 145684 28178098 ~ 28184335 (+) True G788762
TU898791 lncRNA downstream 418 28330732 ~ 28331006 (+) True G789312
TU898792 lncRNA downstream 715 28331029 ~ 28331312 (+) True G789313
TU898769 lncRNA downstream 11351 28341665 ~ 28342025 (+) True G789294
TU898803 lncRNA downstream 23653 28353967 ~ 28358180 (+) True G789323
TU898821 lncRNA downstream 50817 28381131 ~ 28383324 (+) True G789339
XM_036987755.1 mRNA upstream 169765 28053619 ~ 28160254 (+) False ank2b
XM_021615349.2 mRNA downstream 1492 28331806 ~ 28340457 (+) True LOC110531872
XM_036987768.1 mRNA downstream 117948 28448262 ~ 28548376 (+) False LOC110531876
XM_036987767.1 mRNA downstream 150839 28481153 ~ 28548376 (+) False LOC110531876
XM_036987766.1 mRNA downstream 150840 28481154 ~ 28548376 (+) False LOC110531876
XM_036987769.1 mRNA downstream 150841 28481155 ~ 28548376 (+) False LOC110531876
TU896363 other upstream 842496 27485794 ~ 27487523 (+) True taf6l
TU896328 other upstream 950355 27379332 ~ 27379664 (+) True G787022
TU895770 other upstream 1916487 26413112 ~ 26413532 (+) True G786496
TU895436 other upstream 2371152 25958084 ~ 25958867 (+) True G786218
TU895142 other upstream 2587110 25712997 ~ 25742909 (+) True G785962
TU899899 other downstream 1009667 29339981 ~ 29342203 (+) False rbpjb
TU899896 other downstream 1010133 29340447 ~ 29342203 (+) True rbpjb
TU901372 other downstream 1952361 30282675 ~ 30288163 (+) False LOC110531891
TU901374 other downstream 1952361 30282675 ~ 30288163 (+) True LOC110531891
TU903452 other downstream 3265682 31595996 ~ 31596918 (+) True G793757

Expression Profile