RNA id: TU898803


Basic Information

Item Value
RNA id TU898803
length 1188
lncRNA type antisense_over
GC content 0.51
exon number 3
gene id G789323
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 28353967 ~ 28358180 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGatgtaaaaacacacacatctaTGTCAACACTTGTATGCACAGttgcgtatacacacacacacacactacaattaaCACACACGCACGTCGGTATGCacgtatgcgcacacacacacacacccaccaaccTTGTATTTCATCTGGAAGTTCTGGACCAGGTTGAGGTCTACAAACATGCGTATGGTGGCCTGAGTGGTCTCAGCGTCGGACAGCTCAAAGTCACTGAAGCTAAACTCCATCAGGCGCAGAGACTGGGCTGACGGAACAGTGGCTGCCTGCAGCGCCCGTGTCtcttcctctgcagcagaggcgtGATACGAGAGGACCTGAgaatgacacacacaaacacacagcgacTGTTCTCCTTAAAAGTCAACACGATCGCTCTGACCGAGTATACAACTAAAAAACAGATTTCACATTTTGGTAGCTGACACTTTCACAGATTTCCTCCCCCacacacatcCTTCAACCCCAAGTCCATCCATATCAGAGGCCTGTCATTGATAATTGGGGGAGAAAAACTGAGAAAGCTAGAAGAGGTCAGTCCTCGCGACGGCTACAGCGCCGCTGGAGAATGGGCTGAAGTGGTGGCTGCTGGGTAACGGCGGGGAGAGTGTCAGCTGCAGCCGAGAGGGGACGTCACCGGGGAGCCCTGACAGTGACAGCTCCAGAATAGAACAgtcagggagagaacaggagagggggaggaccggaggagaggagggggatacaTACGTCATCGAGGGCTGAAGAGGTCTAGGATAGAGTTGGAGTGATCACGCTAGTTCTGTTTTAACGCAGGGGAAGACGGAGCAGAGTGTGGAGAAGACTAGCCAGTCTTTCCTAATGGCAACCATCGCTGTTACTCTCGATCCCCCATGTTTAAGGTCTCCATATTGTAGTTGCCTGCAGAGGCACTGAGCTAGCATTATCTTACAGTACCTTCCCTCAATATTATCATGAACCATTAGGATGTAAAACTCCAAACTGACCTGAGACCTGTGTCTCTTACCTCCAATGTGACCTCCTGTTTGGCCATGGctctctccactgtttcataCATCTGGGTGTTCTGTATACCCAGTCCACAGAAGATGGCGAAGGCCTCCAGGAACTGTTCATCGTTTCGGTTGAAGGACTTCACTTTCCCCGATGCCTCATCCATCTTGTTCACCAACTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU898769 lncRNA upstream 11942 28341665 ~ 28342025 (+) True G789294
TU898792 lncRNA upstream 22655 28331029 ~ 28331312 (+) True G789313
TU898791 lncRNA upstream 22961 28330732 ~ 28331006 (+) True G789312
TU898790 lncRNA upstream 23653 28330019 ~ 28330314 (+) True G789311
TU898789 lncRNA upstream 24092 28329672 ~ 28329875 (+) True G789310
TU898821 lncRNA downstream 22951 28381131 ~ 28383324 (+) True G789339
TU898969 lncRNA downstream 78408 28436588 ~ 28437550 (+) False G789472
TU898970 lncRNA downstream 78408 28436588 ~ 28437397 (+) True G789472
TU898979 lncRNA downstream 88947 28447127 ~ 28447334 (+) True G789481
TU899005 lncRNA downstream 173633 28531813 ~ 28539147 (+) True G789493
XM_021615349.2 mRNA upstream 13510 28331806 ~ 28340457 (+) True LOC110531872
XM_036987756.1 mRNA upstream 193713 28053620 ~ 28160254 (+) False ank2b
XM_036987768.1 mRNA downstream 90082 28448262 ~ 28548376 (+) False LOC110531876
XM_036987767.1 mRNA downstream 122973 28481153 ~ 28548376 (+) False LOC110531876
XM_036987766.1 mRNA downstream 122974 28481154 ~ 28548376 (+) False LOC110531876
XM_036987769.1 mRNA downstream 122975 28481155 ~ 28548376 (+) False LOC110531876
XM_036987770.1 mRNA downstream 122975 28481155 ~ 28548376 (+) False LOC110531876
TU896363 other upstream 866444 27485794 ~ 27487523 (+) True taf6l
TU896328 other upstream 974303 27379332 ~ 27379664 (+) True G787022
TU895770 other upstream 1940435 26413112 ~ 26413532 (+) True G786496
TU895436 other upstream 2395100 25958084 ~ 25958867 (+) True G786218
TU895142 other upstream 2611058 25712997 ~ 25742909 (+) True G785962
TU899899 other downstream 981801 29339981 ~ 29342203 (+) False rbpjb
TU899896 other downstream 982267 29340447 ~ 29342203 (+) True rbpjb
TU901372 other downstream 1924495 30282675 ~ 30288163 (+) False LOC110531891
TU901374 other downstream 1924495 30282675 ~ 30288163 (+) True LOC110531891
TU903452 other downstream 3237816 31595996 ~ 31596918 (+) True G793757

Expression Profile