RNA id: TU898979


Basic Information

Item Value
RNA id TU898979
length 208
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G789481
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 28447127 ~ 28447334 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgcctccttgcagcatgcctaaggcacattcacacagatgagcagggaccctgggaatctttcttttggtgttttcagagtcagtagaaaggcctctttagtgtcctaagttttcataactgtgaccttaattgcataccgtctgtaagctgttagtgtcttaacaaccgttccacaggtgcatgttcattcatttttcatggttcat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU898969 lncRNA upstream 9577 28436588 ~ 28437550 (+) False G789472
TU898970 lncRNA upstream 9730 28436588 ~ 28437397 (+) True G789472
TU898821 lncRNA upstream 63803 28381131 ~ 28383324 (+) True G789339
TU898803 lncRNA upstream 88947 28353967 ~ 28358180 (+) True G789323
TU898769 lncRNA upstream 105102 28341665 ~ 28342025 (+) True G789294
TU899005 lncRNA downstream 84479 28531813 ~ 28539147 (+) True G789493
TU898997 lncRNA downstream 219928 28667262 ~ 28670285 (+) True G789485
TU899150 lncRNA downstream 249359 28696693 ~ 28700897 (+) True G789629
TU899279 lncRNA downstream 476621 28923955 ~ 28996300 (+) True G789754
TU899723 lncRNA downstream 551245 28998579 ~ 28998779 (+) True G790159
XM_021615349.2 mRNA upstream 106670 28331806 ~ 28340457 (+) True LOC110531872
XM_036987756.1 mRNA upstream 286873 28053620 ~ 28160254 (+) False ank2b
XM_036987768.1 mRNA downstream 928 28448262 ~ 28548376 (+) False LOC110531876
XM_036987767.1 mRNA downstream 33819 28481153 ~ 28548376 (+) False LOC110531876
XM_036987766.1 mRNA downstream 33820 28481154 ~ 28548376 (+) False LOC110531876
XM_036987769.1 mRNA downstream 33821 28481155 ~ 28548376 (+) False LOC110531876
XM_036987770.1 mRNA downstream 33821 28481155 ~ 28548376 (+) False LOC110531876
TU896363 other upstream 959604 27485794 ~ 27487523 (+) True taf6l
TU896328 other upstream 1067463 27379332 ~ 27379664 (+) True G787022
TU895770 other upstream 2033595 26413112 ~ 26413532 (+) True G786496
TU895436 other upstream 2488260 25958084 ~ 25958867 (+) True G786218
TU895142 other upstream 2704218 25712997 ~ 25742909 (+) True G785962
TU899899 other downstream 892647 29339981 ~ 29342203 (+) False rbpjb
TU899896 other downstream 893113 29340447 ~ 29342203 (+) True rbpjb
TU901372 other downstream 1835341 30282675 ~ 30288163 (+) False LOC110531891
TU901374 other downstream 1835341 30282675 ~ 30288163 (+) True LOC110531891
TU903452 other downstream 3148662 31595996 ~ 31596918 (+) True G793757

Expression Profile