RNA id: TU899331


Basic Information

Item Value
RNA id TU899331
length 3624
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G789803
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 28454932 ~ 28552172 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGTACTGAATGAAACATTTATTTAAAGATGGACATCAGTATTTCTTGCAAACCAGCGAAGCCAAATAAGAACAAAAGCTAAACAAAAGGCTTAGTTACAGCATTAGAATAATATTAAGCCATATTTTCAGCCTCTCATCATCCTCCACAGGGCCTCAACAACATCGAATCACAGCATATGGTATCCGTTGGTTACACAGTGCAAAATAATAGATTGTGACGGAGCCAAATTCATTTTAGCGTCATCATATTGCATAACGGCAATGTCAGCATAATTCTAATTGTGTGCCACAGAGACGGCTTCGCGTTACGCCTAGCCATTAGGTTAAAAGAACAACATATTTGATAAAGACTAGTCATTCCATAACATTGGGGTTAATACAATGAGGCAGACTTATTTTCACGGGACATTCTATAACAAACATGGTAACACACTTCTCTGTGACCATAGTGGCGCAATggacatatacctgcatacataggATATTCATAAATATCTGGCTTCCAttacaatcaaacaagcaaaaacaGAAGCCACACATTGACCATATGATATGTTATTATGTCTCTATATTCAAAATAAATCGGAAGCAAAAAAATTGCGTCTATTGGGCAGCTCCTTCCGATTTCCTGTATCAAAAGCGTAAATAAAGTTGTGAATCCAACACTGTATTGACCTTGACGTAAGAGAGACACGCAGCTGATTCCTTTGAGTGGGAGGCCTGTTTACCTAAAGAGATGATGAACGGGTTGTGCAACGGGTTGTGTGTATCTGGGCTATGTGAGCTCTGCTGATCTGGCCTAGTGTGTATCTGGGCCATGTGAGCTCTGCTGATCTGGCCTAGTGTGTATCTGGGCTATGTGAGCTCTGCTGATCTGGCCTAGTGTGTATCTGGGCTATGTGAGCTCTGCTGATCTGGCCTAGTGTGTATCTGGGCTATGTGAGCTCTGCTGATCTGGCCTAGTGTGTATCTGGGCTATGTGAGCTCTGCTGATCTGGCCTAGTGTGTATCTGGGCTATGTGAGCTCTGCTGATCTGGCCTAGTGTGTATCTGGGCTATGTGAGCTCTGCTGATCTGGCCTAGTGTGTATCTGGGCTATGTGAGCTCTGCTGATCTGGCCTGGTGTGTATCTGGGCTATGTGAGCTCTGCTGATCTGGCCTGGTGTGTATCTGGGCTATGTGAGCTCTGCTGATCTGGCCTGGTTTGTATCTGGGCTATGTGAGCTCTGCTGATCTGGCCTGACCCTTGAGCAAAACAGAATGCACTTGGCCCTACACTGCTATaaggaacctaaaagggttatttggctgtccctgtaggagaaccctttgaaaaacCCTTGTTGGTTTCAATTGAGGACATGGAAACCAAATGACAAATGAgttcaacctggaaccaaaaaaggttctcctatggggacagccaaagaaccattttttctaagagtgtagacacTGACTGAACTAAGACACATTTAGCATTTCCTCCCTaatagttaaggttaggattaggagaATGGaatctgatcccagatctgtgtgtgccTAAGGGCAAGTTCAGAGCTCAGACCTGGATATGTGTTCCTTAGTTTCTGCCTCTCAGCTTACACTACTGTTTCCACAGCTGTtcaaacacaaaaacaaacacagtgTTTCCGAACAGCCCTCCATTGTGATCTCTGTTCTGGGAAAGCCCTCCTCGCCATTGATAACGCTACATCAACCTTCTTTCAATGTTACAATGATGTCGTAACAGTGATCCAAAAAGGTCAAAACttacacacatccatacacacagcATTCTTCCAAACTGCATAAATGATCATTCGATATAAGCAGACATTAGATTTGACAATGTAATTCTGCAACACTATTGGCATTCACGTTCAACGAGGCACACTCAATACGTGGTCGACTCCATTGCTTCTGtatcagcactttgtgacatctgctgacgCAAAATGggtgttataaatacatttgatttgaatttcgATAAAAGCGCTTTCATTTCAGATTGACCTTAGAAGTCAGGAGACATGAGCTTTGATGACGACAGCTTATTGTTCTACTTACCGATGGAGCAAAACTCTAATTTGATATTTATTCAGATTGACTGTGTTTTTCATTTATATTGAGTATTCTCCAATCCACCTGCCCTATAGCCATTCGATTTAAAGATGACCATCCTCATCCTCCCTTTAAGATGTCTATAAATAAATGCCAAACAAAAGCATCTGAATTGGGCTTTTCATTGGACAAAAGTTGTGTTACAAAATGTGCATAAAATAATTAACCAAAATGAGGGACCAAAATGATCCAAATTGAGAATGTTTTTACAAACATTTTCATACATTTCCATCGTAGACGGCCTCGACCATCTCTCATATGCATGCATGCCCTAGAGGCAATATATACCTTGGCTTGCATAACAAACTCCGAGACAAATATATGTACGCTGTATGTCACATGTATATTGTATGCCACTTACGGTTGAATTATTGTTGGAGTTTCTGAAGACTTGGCCAAGCCAATATATGTTTTCCCACTACATATGTGGCAGTGGATGCCAAATGACTTACAAACAACGAACATAGAAAGGGTTCATCCTCTATCACAGAAGGTACAGATTATATGTCAGTATGTCATTATCAATTCATTAAGCAAGGCTTAACTTGTATTGCTCAAGTGCTGCTGCAGGCCTGTGTTAGATAGTGTGAGGACAATGAGGGGGGAGCAGATGATAAAGGTGTCATAACAACACGATTCTCACATCTGAACACTTCCACAGAATGGATGACGGCCATCCAGGAGTCAAAAATAGCTTATAAAAATAATGTCGGTTTTTGATGGGAAGGGATTTACGTAAAAGTGTCTGGCAAGGCAGTGTTTGACAACAGGGCTTGAAAGAACCTGAGGCTCTATACATCTGCTATGGGTATCAGTGGTGCCTATGGTACTGTTTTTACCCATGATTCATGCTGTTGGCTCTGATCCAACCCCAACACTCCCATCTTCACTGATTTATGAGTGGCGTGTGTAAGATACAGCCCTCTATCAACAAATCACGGCATGGCTATCAAACAAACTACCCACTTAAAAAAGGAGAAGATAAACTTTTCCTATCTTAACCTCCACTGCTGTAAAATGATACATCTGTTGTTCAGATATGAGACTATAAGTTGTGGTGAGTTAGAGGCTAGCACAGGCTACAGCGAGGaaagggaggatagagagagagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaagaaaaaaagaaagaaagaaagaaaaggagaTGGAAAAAGACAGAGAAGAGGAGTAAGAGGAGATGTGAGGtggtaagagaaagagagagaaagagagagagggggggagaatgagagagaggggggggatgagagagagagggggggagaatgagagagagaggggggggatgagagagagaggggggggatgagagagagaggggggggtgagagagagacagaggggggggggtgagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaccgcagTGACAGGTGTTGTGCtttccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU899398 lncRNA downstream 9890 28536883 ~ 28537548 (-) True G789862
TU899392 lncRNA downstream 29872 28517036 ~ 28517566 (-) True G789856
TU898932 lncRNA downstream 163900 28382749 ~ 28383538 (-) True G789436
TU898930 lncRNA downstream 165008 28381856 ~ 28382430 (-) True G789435
TU898927 lncRNA downstream 166034 28380379 ~ 28381404 (-) True G789433
TU899490 lncRNA upstream 111279 28663451 ~ 28666058 (-) True G789945
TU899518 lncRNA upstream 133893 28686065 ~ 28688698 (-) True G789967
TU899528 lncRNA upstream 137197 28689369 ~ 28690678 (-) True G789968
TU899597 lncRNA upstream 270561 28822733 ~ 28823470 (-) True G790037
TU899684 lncRNA upstream 383245 28935417 ~ 28939614 (-) True G790120
XM_021615352.2 mRNA downstream 103817 28436541 ~ 28443621 (-) True LOC110531875
XM_036987765.1 mRNA downstream 115432 28342139 ~ 28432006 (-) True LOC110531873
XM_036987762.1 mRNA downstream 138805 28342139 ~ 28408633 (-) False LOC110531873
XM_036987763.1 mRNA downstream 138805 28342139 ~ 28408633 (-) False LOC110531873
XM_036987764.1 mRNA downstream 138806 28342139 ~ 28408632 (-) False LOC110531873
XM_036987780.1 mRNA upstream 115067 28667239 ~ 28993223 (-) False LOC110531879
XM_036987781.1 mRNA upstream 115067 28667239 ~ 28993223 (-) False LOC110531879
XM_036987783.1 mRNA upstream 115067 28667239 ~ 28993223 (-) False LOC110531879
XM_036987784.1 mRNA upstream 115067 28667239 ~ 28993223 (-) False LOC110531879
XM_036987785.1 mRNA upstream 115067 28667239 ~ 28993223 (-) False LOC110531879
TU898702 other downstream 400459 28145220 ~ 28146979 (-) True G789228
TU898444 other downstream 713174 27822781 ~ 27834264 (-) True LOC100136672
TU897903 other downstream 983913 27563162 ~ 27563525 (-) True G788495
TU897812 other downstream 1079116 27463292 ~ 27468322 (-) True G788408
TU897739 other downstream 1166149 27380162 ~ 27381289 (-) True LOC110531854
TU899489 other upstream 111279 28663451 ~ 28666058 (-) False G789945
TU900103 other upstream 491264 29043436 ~ 29043807 (-) True LOC110531881
TU900128 other upstream 496726 29048898 ~ 29049244 (-) True G790535
TU900144 other upstream 516680 29068852 ~ 29069187 (-) True G790551
TU900193 other upstream 579202 29131374 ~ 29149017 (-) True G790598

Expression Profile