RNA id: TU899740


Basic Information

Item Value
RNA id TU899740
length 225
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G790176
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 29025398 ~ 29025622 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

catcaggccagagaatcttgtttctcatggtctgagagtcctttaggcgccttttagcaaactccaagcgggctgtcatgtgccttttactgaagagtgtcTTACAACTGGCCACTacaccataaatgcctgattggtggagggctgcagagatggatgtccttctggaagtttcccccatctccacagaggaactctggcgctctgtcagagtgctctacgaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU899736 lncRNA upstream 5238 29015166 ~ 29020160 (+) True G790172
TU899723 lncRNA upstream 26619 28998579 ~ 28998779 (+) True G790159
TU899279 lncRNA upstream 29098 28923955 ~ 28996300 (+) True G789754
TU899150 lncRNA upstream 324501 28696693 ~ 28700897 (+) True G789629
TU898997 lncRNA upstream 355113 28667262 ~ 28670285 (+) True G789485
TU899741 lncRNA downstream 1089 29026711 ~ 29026960 (+) True G790177
TU899745 lncRNA downstream 6882 29032504 ~ 29032733 (+) True G790181
TU899749 lncRNA downstream 19214 29044836 ~ 29045124 (+) True G790185
TU899753 lncRNA downstream 22047 29047669 ~ 29047876 (+) True G790189
TU899754 lncRNA downstream 22297 29047919 ~ 29048123 (+) True G790190
XR_005053221.1 mRNA upstream 131340 28893048 ~ 28894058 (+) True LOC118966022
XM_036987777.1 mRNA upstream 361764 28553769 ~ 28663634 (+) False LOC110531878
XM_021615358.2 mRNA downstream 10833 29036455 ~ 29039588 (+) True LOC110531882
XM_036987790.1 mRNA downstream 222505 29248127 ~ 29340353 (+) False rbpjb
XM_036987791.1 mRNA downstream 222511 29248133 ~ 29337758 (+) False rbpjb
XM_036987792.1 mRNA downstream 274253 29299875 ~ 29340353 (+) False rbpjb
XM_036987793.1 mRNA downstream 295982 29321604 ~ 29340353 (+) False rbpjb
TU896363 other upstream 1537875 27485794 ~ 27487523 (+) True taf6l
TU896328 other upstream 1645734 27379332 ~ 27379664 (+) True G787022
TU895770 other upstream 2611866 26413112 ~ 26413532 (+) True G786496
TU895436 other upstream 3066531 25958084 ~ 25958867 (+) True G786218
TU895142 other upstream 3282489 25712997 ~ 25742909 (+) True G785962
TU899899 other downstream 314359 29339981 ~ 29342203 (+) False rbpjb
TU899896 other downstream 314825 29340447 ~ 29342203 (+) True rbpjb
TU901372 other downstream 1257053 30282675 ~ 30288163 (+) False LOC110531891
TU901374 other downstream 1257053 30282675 ~ 30288163 (+) True LOC110531891
TU903452 other downstream 2570374 31595996 ~ 31596918 (+) True G793757

Expression Profile