RNA id: TU899741


Basic Information

Item Value
RNA id TU899741
length 250
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G790177
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 29026711 ~ 29026960 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aggaaatggaagacatacaagaccactgataatctccctcgatctggggctccacgcaagatctcaccctgtggggtcaaaattatcacaagaacggggatcaaaaatcccagaaccacatggggggacctagtgaatgacctgcagagagctgggaccaaagtaacaaagcctaccatcagtaacacactacgccgccagggactcaaatcctgcagtgccagacgtgtccccctgcttaagccagtac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU899740 lncRNA upstream 1089 29025398 ~ 29025622 (+) True G790176
TU899736 lncRNA upstream 6551 29015166 ~ 29020160 (+) True G790172
TU899723 lncRNA upstream 27932 28998579 ~ 28998779 (+) True G790159
TU899279 lncRNA upstream 30411 28923955 ~ 28996300 (+) True G789754
TU899150 lncRNA upstream 325814 28696693 ~ 28700897 (+) True G789629
TU899745 lncRNA downstream 5544 29032504 ~ 29032733 (+) True G790181
TU899749 lncRNA downstream 17876 29044836 ~ 29045124 (+) True G790185
TU899753 lncRNA downstream 20709 29047669 ~ 29047876 (+) True G790189
TU899754 lncRNA downstream 20959 29047919 ~ 29048123 (+) True G790190
TU899755 lncRNA downstream 21723 29048683 ~ 29048906 (+) True G790191
XR_005053221.1 mRNA upstream 132653 28893048 ~ 28894058 (+) True LOC118966022
XM_036987777.1 mRNA upstream 363077 28553769 ~ 28663634 (+) False LOC110531878
XM_021615358.2 mRNA downstream 9495 29036455 ~ 29039588 (+) True LOC110531882
XM_036987790.1 mRNA downstream 221167 29248127 ~ 29340353 (+) False rbpjb
XM_036987791.1 mRNA downstream 221173 29248133 ~ 29337758 (+) False rbpjb
XM_036987792.1 mRNA downstream 272915 29299875 ~ 29340353 (+) False rbpjb
XM_036987793.1 mRNA downstream 294644 29321604 ~ 29340353 (+) False rbpjb
TU896363 other upstream 1539188 27485794 ~ 27487523 (+) True taf6l
TU896328 other upstream 1647047 27379332 ~ 27379664 (+) True G787022
TU895770 other upstream 2613179 26413112 ~ 26413532 (+) True G786496
TU895436 other upstream 3067844 25958084 ~ 25958867 (+) True G786218
TU895142 other upstream 3283802 25712997 ~ 25742909 (+) True G785962
TU899899 other downstream 313021 29339981 ~ 29342203 (+) False rbpjb
TU899896 other downstream 313487 29340447 ~ 29342203 (+) True rbpjb
TU901372 other downstream 1255715 30282675 ~ 30288163 (+) False LOC110531891
TU901374 other downstream 1255715 30282675 ~ 30288163 (+) True LOC110531891
TU903452 other downstream 2569036 31595996 ~ 31596918 (+) True G793757

Expression Profile