RNA id: TU899745


Basic Information

Item Value
RNA id TU899745
length 230
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G790181
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 29032504 ~ 29032733 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtgttatatttctaggtgtttggcctggtatggttcccaatcagaggcagctgtcaatcgttgtctctgattgagaaccatacttaggcagcctgttttcccactatgggttgtgggtagttgttttccgtttcagtgtttgcaccatatGGGACTATTTCGGTTTTCATTtcttctcttgttcttttgtatttagtgttcagttaattaaaggaaatatgaacacgta

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU899741 lncRNA upstream 5544 29026711 ~ 29026960 (+) True G790177
TU899740 lncRNA upstream 6882 29025398 ~ 29025622 (+) True G790176
TU899736 lncRNA upstream 12344 29015166 ~ 29020160 (+) True G790172
TU899723 lncRNA upstream 33725 28998579 ~ 28998779 (+) True G790159
TU899279 lncRNA upstream 36204 28923955 ~ 28996300 (+) True G789754
TU899749 lncRNA downstream 12103 29044836 ~ 29045124 (+) True G790185
TU899753 lncRNA downstream 14936 29047669 ~ 29047876 (+) True G790189
TU899754 lncRNA downstream 15186 29047919 ~ 29048123 (+) True G790190
TU899755 lncRNA downstream 15950 29048683 ~ 29048906 (+) True G790191
TU899760 lncRNA downstream 24781 29057514 ~ 29057801 (+) True G790196
XR_005053221.1 mRNA upstream 138446 28893048 ~ 28894058 (+) True LOC118966022
XM_036987777.1 mRNA upstream 368870 28553769 ~ 28663634 (+) False LOC110531878
XM_021615358.2 mRNA downstream 3722 29036455 ~ 29039588 (+) True LOC110531882
XM_036987790.1 mRNA downstream 215394 29248127 ~ 29340353 (+) False rbpjb
XM_036987791.1 mRNA downstream 215400 29248133 ~ 29337758 (+) False rbpjb
XM_036987792.1 mRNA downstream 267142 29299875 ~ 29340353 (+) False rbpjb
XM_036987793.1 mRNA downstream 288871 29321604 ~ 29340353 (+) False rbpjb
TU896363 other upstream 1544981 27485794 ~ 27487523 (+) True taf6l
TU896328 other upstream 1652840 27379332 ~ 27379664 (+) True G787022
TU895770 other upstream 2618972 26413112 ~ 26413532 (+) True G786496
TU895436 other upstream 3073637 25958084 ~ 25958867 (+) True G786218
TU895142 other upstream 3289595 25712997 ~ 25742909 (+) True G785962
TU899899 other downstream 307248 29339981 ~ 29342203 (+) False rbpjb
TU899896 other downstream 307714 29340447 ~ 29342203 (+) True rbpjb
TU901372 other downstream 1249942 30282675 ~ 30288163 (+) False LOC110531891
TU901374 other downstream 1249942 30282675 ~ 30288163 (+) True LOC110531891
TU903452 other downstream 2563263 31595996 ~ 31596918 (+) True G793757

Expression Profile