RNA id: TU899749


Basic Information

Item Value
RNA id TU899749
length 289
lncRNA type antisense_over
GC content 0.54
exon number 1
gene id G790185
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 29044836 ~ 29045124 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTTTCCAAAGCCATATTGCTCGATCGCATCTAGTAGCGACTGCTCTTCCCTGCTAGTCCATCCTCCCTCCGCTTCGGGACCCCAGAGTGTGAAGCGCCCGCCGTCGACTTGCTGATAACCGTGCCATCGCCGATGATTACCGATTTCTGCACCCGCGGAGAAGCATTCCGGACACAGTTCGATATCTGGGCAGTCAGTACAGCGAAGTCTCAGATTCGTAACGTCTGCAAGGCAGTTTACGCAGTACTTCTTTCCTAGGTCGGCCATGTTGCTGGCTTCTTGCTTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU899745 lncRNA upstream 12103 29032504 ~ 29032733 (+) True G790181
TU899741 lncRNA upstream 17876 29026711 ~ 29026960 (+) True G790177
TU899740 lncRNA upstream 19214 29025398 ~ 29025622 (+) True G790176
TU899736 lncRNA upstream 24676 29015166 ~ 29020160 (+) True G790172
TU899723 lncRNA upstream 46057 28998579 ~ 28998779 (+) True G790159
TU899753 lncRNA downstream 2545 29047669 ~ 29047876 (+) True G790189
TU899754 lncRNA downstream 2795 29047919 ~ 29048123 (+) True G790190
TU899755 lncRNA downstream 3559 29048683 ~ 29048906 (+) True G790191
TU899760 lncRNA downstream 12390 29057514 ~ 29057801 (+) True G790196
TU899762 lncRNA downstream 13863 29058987 ~ 29059231 (+) True G790198
XM_021615358.2 mRNA upstream 5248 29036455 ~ 29039588 (+) True LOC110531882
XR_005053221.1 mRNA upstream 150778 28893048 ~ 28894058 (+) True LOC118966022
XM_036987777.1 mRNA upstream 381202 28553769 ~ 28663634 (+) False LOC110531878
XM_036987790.1 mRNA downstream 203003 29248127 ~ 29340353 (+) False rbpjb
XM_036987791.1 mRNA downstream 203009 29248133 ~ 29337758 (+) False rbpjb
XM_036987792.1 mRNA downstream 254751 29299875 ~ 29340353 (+) False rbpjb
XM_036987793.1 mRNA downstream 276480 29321604 ~ 29340353 (+) False rbpjb
XM_036987795.1 mRNA downstream 308992 29354116 ~ 29381669 (+) True tbc1d19
TU896363 other upstream 1557313 27485794 ~ 27487523 (+) True taf6l
TU896328 other upstream 1665172 27379332 ~ 27379664 (+) True G787022
TU895770 other upstream 2631304 26413112 ~ 26413532 (+) True G786496
TU895436 other upstream 3085969 25958084 ~ 25958867 (+) True G786218
TU895142 other upstream 3301927 25712997 ~ 25742909 (+) True G785962
TU899899 other downstream 294857 29339981 ~ 29342203 (+) False rbpjb
TU899896 other downstream 295323 29340447 ~ 29342203 (+) True rbpjb
TU901372 other downstream 1237551 30282675 ~ 30288163 (+) False LOC110531891
TU901374 other downstream 1237551 30282675 ~ 30288163 (+) True LOC110531891
TU903452 other downstream 2550872 31595996 ~ 31596918 (+) True G793757

Expression Profile