RNA id: TU899754


Basic Information

Item Value
RNA id TU899754
length 205
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G790190
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 29047919 ~ 29048123 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTATACTAATGTAacgttattgatctgtcagtttccctagctAATTCTCTATTTTTCACACTTACATGGTATAAATAGTTCTACAGACTACACTGCCATGGTGCACAGGCAGTATACAATACTATGCTCATCAAGTCTTAGCaagatcagatggtgacaggtgtcctaGCTGTGTTAGACAGCCAAGGAAGACCAGTGTAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU899753 lncRNA upstream 43 29047669 ~ 29047876 (+) True G790189
TU899749 lncRNA upstream 2795 29044836 ~ 29045124 (+) True G790185
TU899745 lncRNA upstream 15186 29032504 ~ 29032733 (+) True G790181
TU899741 lncRNA upstream 20959 29026711 ~ 29026960 (+) True G790177
TU899740 lncRNA upstream 22297 29025398 ~ 29025622 (+) True G790176
TU899755 lncRNA downstream 560 29048683 ~ 29048906 (+) True G790191
TU899760 lncRNA downstream 9391 29057514 ~ 29057801 (+) True G790196
TU899762 lncRNA downstream 10864 29058987 ~ 29059231 (+) True G790198
TU899769 lncRNA downstream 22006 29070129 ~ 29072398 (+) True G790205
TU899770 lncRNA downstream 24653 29072776 ~ 29073027 (+) True G790206
XM_021615358.2 mRNA upstream 8331 29036455 ~ 29039588 (+) True LOC110531882
XR_005053221.1 mRNA upstream 153861 28893048 ~ 28894058 (+) True LOC118966022
XM_036987778.1 mRNA upstream 384285 28553783 ~ 28663634 (+) False LOC110531878
XM_036987790.1 mRNA downstream 200004 29248127 ~ 29340353 (+) False rbpjb
XM_036987791.1 mRNA downstream 200010 29248133 ~ 29337758 (+) False rbpjb
XM_036987792.1 mRNA downstream 251752 29299875 ~ 29340353 (+) False rbpjb
XM_036987793.1 mRNA downstream 273481 29321604 ~ 29340353 (+) False rbpjb
XM_036987795.1 mRNA downstream 305993 29354116 ~ 29381669 (+) True tbc1d19
TU896363 other upstream 1560396 27485794 ~ 27487523 (+) True taf6l
TU896328 other upstream 1668255 27379332 ~ 27379664 (+) True G787022
TU895770 other upstream 2634387 26413112 ~ 26413532 (+) True G786496
TU895436 other upstream 3089052 25958084 ~ 25958867 (+) True G786218
TU895142 other upstream 3305010 25712997 ~ 25742909 (+) True G785962
TU899899 other downstream 291858 29339981 ~ 29342203 (+) False rbpjb
TU899896 other downstream 292324 29340447 ~ 29342203 (+) True rbpjb
TU901372 other downstream 1234552 30282675 ~ 30288163 (+) False LOC110531891
TU901374 other downstream 1234552 30282675 ~ 30288163 (+) True LOC110531891
TU903452 other downstream 2547873 31595996 ~ 31596918 (+) True G793757

Expression Profile