RNA id: TU900330


Basic Information

Item Value
RNA id TU900330
length 2027
lncRNA type antisense_over
GC content 0.40
exon number 1
gene id G790731
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 29337766 ~ 29339792 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTAGTGGTCAGGCAGACAAACCCCAAGAGACACGACGACATGACCTGTACAATATTGCTGTACGTTTTTCCAAATACACATATTcaattacacagacacacatctagAAGGCCTTATTAATTCTAACAGGAGACTTGATCACCATAAATACAGCCGGTGAGTGTGGCTACTTTCAGAAAGCGAGTTTTACAATGTACATGTAATTGTTGTGTAAGGTCAAAAACCACAGGACGTTAGTTAAAAGGCTTTCAGGAGGCCAAACAGAGGAGCTCAAAGCCCTCACAAGACAATGTATCCATGCCAAAATGGAGAAAGCAGGGCACTGTGATAATAAAGTAcatcatttatataagtattgtACTTGTACACTGAACAGAGTTAATATTATTCTTAAAAAGGTCCACAAATCTTCCAGAAGGCTGACaatgtggttttggagcagtggcagaTGGATTGCATTATGGGTAATATAGTCCAATGAAACAACTTAACAAGTGGTgataagacagacagactgttttTGCATCACACAGGTTCTTGGAAGTTACGTAAATGGAAAGGGCAGGTCGTTGGAAGGGTATCGGTTCTCTTTGACATTTAAGTTAGCGGTAAGGCCACATCAAATTGGTCTGTCTTTTCTGTTTTCTCAAAACAATGGAAGTTTTAAATACCACGAGAACTATACACAGGAAGACACCAAGGCCTGGTGAGACAGTATACGGACTGACAGATTTCAAGACGTCGTCAGATACTTCTGTGGCGACCAATACATCGGCATGATCTCAACATGGGATATATGACACGATATCTTCTGACTGTGTGCACAGTAATAATATACAGTTCTAAGGCTACCTTTTCAATTTGATGACTAGAATCATAAAATGTATGTGGAAATGAGAAACTATTTTGTAACTGGTAGTGGAAGTCGAGTTTTTTAAAGTTTGAAATACAATGGAAGAATTCTGCAGACTTCGTTATGGCTCCTTGTGTGATGTACAGACATGTAATTTCCGAAGGAAACGTAGCGAGTAGCACACAGAGAGTATTGCAGACAAGGCAGAGGCATTGCTTAAAGCTTTTCTTTTTAAAGACTTCATAAAAACCAATGGAGAATCCAAAATTAGGCCTTCTGAGGTCACTTCATAACACAAACCGAACCTTCGGTTaggtaaacaaaacaaaaagaaatcCCCAGACTTTAGTCATTTTTTTTTAAGAGCAAAGTATCAAAAATTTAACGTTCCGTCCAAAAGACCGGGGGGGGGGAGGAGCAGGCGTTTGACGGAGATAAGGGTAGCTATAATACACAAGCCAGGTCGggatttgccccccccccccccaaaaaaaggccAAAGCTAGGAGGGTGAGAATAGAAACTATTTGGTAACAAAAGTGTACTATATATTTCATACAAAAAAAGGTATGGAGAAAATGTACCTTTACTAAAGCTTATACGAGATCCTTGGTCCATAaaaactgttatcatcatcacgTTTTTATATGTGTCCCTCTATACCCAATCCTCGCTCTCCCTCCAACAACGATACATCTCGCCCCCTTTACAGAAACATACACAAACTAACGCAACATATAAAAACAAAGGAGGAAAAAAATGATCGGAGGGAGGGGAGCACAAAAACTATCCTTTTATGTTAACATTTTATACATGTGGCAGATGCATCGCTGTTGTGGTATCGATTTTCTCACGGCCGACAAAGGCGCTGGTACTCTGAGCCAATAGGAACTTATTCCACAGCTCCAACACCAGAGACAAGATGGTAGCGGTGAGGAGTTCCGCACAGTTTCTCTTATTTCCGTTGGTTGACAACTTTTGACATCGTTCTTTCCTTCgaattcctcctcttcctcccttttgtCCGACCAATTTCCTATTTCAGCTTCTTTTCTTGTATCCAAAATCAATATGCAGCACTTTTAGAGAGTCCGTTTACTTTGTAGTCTTTTCTTACCATGTGGTACGTTTTGCTCTCAAGGCATAttgtgtgtataagtgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU900323 lncRNA downstream 4979 29332290 ~ 29332787 (-) True G790724
TU900314 lncRNA downstream 9393 29325516 ~ 29328373 (-) True G790716
TU900168 lncRNA downstream 201326 29104062 ~ 29136440 (-) True G790573
TU900149 lncRNA downstream 259732 29077824 ~ 29078034 (-) True G790556
TU900146 lncRNA downstream 266505 29070083 ~ 29071261 (-) True LOC110531883
TU900332 lncRNA upstream 91 29339883 ~ 29342202 (-) False G790732
TU900333 lncRNA upstream 91 29339883 ~ 29340307 (-) False G790732
TU900331 lncRNA upstream 659 29340451 ~ 29342202 (-) True G790732
TU900368 lncRNA upstream 43463 29383255 ~ 29383467 (-) True G790762
TU900461 lncRNA upstream 175920 29515712 ~ 29527428 (-) True G790852
XM_036987788.1 mRNA downstream 163178 29140350 ~ 29174588 (-) False LOC110531884
XR_005053222.1 mRNA downstream 163178 29140350 ~ 29174588 (-) True LOC110531884
XM_036987789.1 mRNA downstream 168835 29140350 ~ 29168931 (-) False LOC110531884
XM_036987787.1 mRNA downstream 198043 29070047 ~ 29139723 (-) False LOC110531883
XM_021615359.2 mRNA downstream 198092 29070047 ~ 29139674 (-) False LOC110531883
XM_021615366.2 mRNA upstream 4589 29344381 ~ 29353599 (-) True LOC110531887
LOC110532982 mRNA upstream 1020015 30359807 ~ 30360792 (-) True LOC110532982
LOC118965933 mRNA upstream 1492934 30832726 ~ 30834388 (-) True LOC118965933
XM_036986936.1 mRNA upstream 1698286 31038078 ~ 31040215 (-) True LOC118965934
LOC110531151 mRNA upstream 2029691 31369483 ~ 31494494 (-) True LOC110531151
TU900193 other downstream 188749 29131374 ~ 29149017 (-) True G790598
TU900144 other downstream 268579 29068852 ~ 29069187 (-) True G790551
TU900128 other downstream 288522 29048898 ~ 29049244 (-) True G790535
TU900103 other downstream 293959 29043436 ~ 29043807 (-) True LOC110531881
TU899489 other downstream 671708 28663451 ~ 28666058 (-) False G789945
TU901919 other upstream 975518 30315310 ~ 30357964 (-) True G792267
TU903165 other upstream 2063690 31403482 ~ 31403869 (-) True G793472
TU903182 other upstream 2078663 31418455 ~ 31418973 (-) True G793489
TU903541 other upstream 2321447 31661239 ~ 31662198 (-) True G793842
TU904054 other upstream 2686279 32026071 ~ 32028268 (-) False G794311

Expression Profile