RNA id: TU900332


Basic Information

Item Value
RNA id TU900332
length 2320
lncRNA type antisense_over
GC content 0.42
exon number 1
gene id G790732
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 29339883 ~ 29342202 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTCACTTTTtatttcttgatttttttttatgCCAATATTGCaagtaacatttttttttaatgacataTGGATTTGAGCATGAACTGGAACTGAAATATGTACAAAAAACTGAAACAAACAGTCCCCTTGTTTTCACGTTATTGCTAAAATGTTACAAACTGCACAGGTTTCTACCATCGGCAACCCTTTAAGCACTGAGTATACTACCACACTGACAGACTGACACTCTGCTTAACATTACTACaacattacacagagagagagagagagtgtgagaaaggagagagagtgtgtgagaatgGACGTGTGAGGGGGGAAAGAGACTGCAGCAAAGCCAAGCGTACAGAGCTAAGAGTGTAAAGGGATGAGAGGGTAAGTCAAAATGTACGtacacagacagaggagagacggaaagaaagagagaagcgTAAAGCACTTCATAGTGCAGCCAGCCAATAGTCTTGGGGAGAATGTCAGGCCGAGTGCAACAGAGGAAAGGCTGCTCCAACACGCCTTTTCATTTATTTACAGCTGCCTCTCGGTCTGTCCTGTTTCGTTTAGCAGTGCATGAGAAATCTACGTTATAAAAAGACATTTGGTATATTAgaggatacatacatacatacattgttCAGAGCtcgttacaacaacaaaaaacaacagctGCTTTTGGAAGAACAAAACAAACCATATGGACTGACCGAAAAATGAAAACCGGTGTGTATACAGTATTTTCAAAAAGCATCACACAAGTTGGAGAATATTTTGTATTTTGCTGGGTGACCTTTTGTTACCATGTTGCTAAAGTTTGCTCAGATAATAAAAAGCCACGTAACAACATTCCACCCCCTGTAGGGGGGAGAGCTGCCTTCCCCTTGTTGAGTGAAACCTGAGGAAGGGGAGCACTGATGCGCTTCTTGACCATAATAGTTGGTTCTCTGGACccaccctctcctcctgctccaatcCTCCATGCCTCCACTGTTCTATAGAGCACATGTAAACCGTTCAACCagtgtcatgttcattagggcacaccgttGCAAACGTTTCATTCCATTTCCcgcctactgaacatgacccagcaAAGAGGATCAAAGAGAGATATGAGAATACGCACGACCCTTCCACTGTTTAAGAGATGCAGCGCAATGCCACTTCCTTCCAAACTCACCCGGGCATCAGTGAGAAACGTAAGGAGCAGGCAGGGTGGAGCCCAGAGAGACAACAGAAAGTATCGAAACAGAAATATAATAACACAAGCAGAATGACAGATCGACTGACTGGAGGACGCCTTAGGCATTAGAGAGGCGTTCCCAAACTCACTTTGATATCTAAGAGATAAGCTCGCCTCTACCAGCTGAAACGGGCACAATGAAAACACTGCGCAAAACCCAAACATATTTGGTGACCACCTTATTGACATATCACAATAGAGTAAAGGGTTAAGAAAGGCCAGTAGCATTTCTCTttgttgtgtaaaaaaaaaaagagtccatattaaggTGATTAGTGACAAAGCTCATGTTGGTTTGATGCTACAAAATGTTCAATTTAGGTTGATACACCCATGCTTTAATTCATTAGAAAAAGTACAACTGTTGCTGGACCGACCTTTTGTAAATTGACAACCCAGGCCAAACTAGGCAGCAAGGGCAATAATGCACTTATTTCTTTGACATAAAATAAGACAAGGGGGGAAACTTTATACCAATAATTTAAAATAATATCAATATTACACTGTTTACATTAACATCAATGGCTGGAaaaatagaggggggggggggggggggggggggtaataatcTAAATagggagggggaaaaaaagcaTCCCTTAAGTttgcattttttttgggggggggggggggggagaaatagAGCACTTTTTTGTTCCCCATTATTAAAGGGATATGACTGTTAAATGGGTACATGAATGACATTGGCCAGAAATACTTCTTAATTAATAAGCAGACATTCAAGTTAAAGCATCATAGTTCTTCCCGGAAGTATATACAGTTCCACTGTAATACTATGATCAAAGTATtgcctttttctttttttaattgtGTTGATCCACATATTATTTCCAACAATGAGAGAGAAACAATCACTTGTTTTATATTTGGATCAAGTCGGAAGACGGCGCGGGACCCAAACAATCTTCAAAGTCCATCTTTACAAGAGCATTGATTGTTTGGAACATAAAACGGTGTACGCATccacgcacccacccacccaaccacatTTTGAAATGGAGCGAGTCTCACTCACTGTTCCATTGTTAGACTACACAGAGGAGCCAAACACacactcgct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU900330 lncRNA downstream 91 29337766 ~ 29339792 (-) True G790731
TU900323 lncRNA downstream 7096 29332290 ~ 29332787 (-) True G790724
TU900314 lncRNA downstream 11510 29325516 ~ 29328373 (-) True G790716
TU900168 lncRNA downstream 203443 29104062 ~ 29136440 (-) True G790573
TU900149 lncRNA downstream 261849 29077824 ~ 29078034 (-) True G790556
TU900368 lncRNA upstream 41053 29383255 ~ 29383467 (-) True G790762
TU900461 lncRNA upstream 173510 29515712 ~ 29527428 (-) True G790852
TU900552 lncRNA upstream 268013 29610215 ~ 29610531 (-) True G790942
TU900563 lncRNA upstream 279042 29621244 ~ 29621535 (-) True G790953
TU900580 lncRNA upstream 288400 29630602 ~ 29630830 (-) True G790970
XM_036987788.1 mRNA downstream 165295 29140350 ~ 29174588 (-) False LOC110531884
XR_005053222.1 mRNA downstream 165295 29140350 ~ 29174588 (-) True LOC110531884
XM_036987789.1 mRNA downstream 170952 29140350 ~ 29168931 (-) False LOC110531884
XM_036987787.1 mRNA downstream 200160 29070047 ~ 29139723 (-) False LOC110531883
XM_021615359.2 mRNA downstream 200209 29070047 ~ 29139674 (-) False LOC110531883
XM_021615366.2 mRNA upstream 2179 29344381 ~ 29353599 (-) True LOC110531887
LOC110532982 mRNA upstream 1017605 30359807 ~ 30360792 (-) True LOC110532982
LOC118965933 mRNA upstream 1490524 30832726 ~ 30834388 (-) True LOC118965933
XM_036986936.1 mRNA upstream 1695876 31038078 ~ 31040215 (-) True LOC118965934
LOC110531151 mRNA upstream 2027281 31369483 ~ 31494494 (-) True LOC110531151
TU900193 other downstream 190866 29131374 ~ 29149017 (-) True G790598
TU900144 other downstream 270696 29068852 ~ 29069187 (-) True G790551
TU900128 other downstream 290639 29048898 ~ 29049244 (-) True G790535
TU900103 other downstream 296076 29043436 ~ 29043807 (-) True LOC110531881
TU899489 other downstream 673825 28663451 ~ 28666058 (-) False G789945
TU901919 other upstream 973108 30315310 ~ 30357964 (-) True G792267
TU903165 other upstream 2061280 31403482 ~ 31403869 (-) True G793472
TU903182 other upstream 2076253 31418455 ~ 31418973 (-) True G793489
TU903541 other upstream 2319037 31661239 ~ 31662198 (-) True G793842
TU904054 other upstream 2683869 32026071 ~ 32028268 (-) False G794311

Expression Profile