RNA id: TU901152


Basic Information

Item Value
RNA id TU901152
length 242
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G791531
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 30043345 ~ 30043586 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggttttcatcaaggatctctctctgtactttgctccgttcatctttccctagatcctgactagtctcccagaccctGCCACTGAAtaacaaccccacagcatgatgctgccaccaccatgcttcaccgtagggatgatgctaggtttcctccagatgtgacgtttggcattcaggccaaagtgttcaatgttggtttcatcagaccagataatcttgtttcttgtGGTCTAGGGTTctttac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU901109 lncRNA downstream 30762 30012357 ~ 30012583 (-) True G791488
TU901094 lncRNA downstream 41739 30001396 ~ 30001606 (-) True G791473
TU900982 lncRNA downstream 126867 29916198 ~ 29916478 (-) True G791364
TU900977 lncRNA downstream 132560 29910556 ~ 29910785 (-) True G791359
TU900897 lncRNA downstream 188222 29854887 ~ 29855123 (-) True G791280
TU901165 lncRNA upstream 7155 30050741 ~ 30050940 (-) True G791544
TU901200 lncRNA upstream 30830 30074416 ~ 30074806 (-) True G791579
TU901212 lncRNA upstream 37025 30080611 ~ 30080842 (-) True G791591
TU901560 lncRNA upstream 266892 30310478 ~ 30310687 (-) True G791925
TU902093 lncRNA upstream 484735 30528321 ~ 30543462 (-) True G792433
XM_021615366.2 mRNA downstream 689746 29344381 ~ 29353599 (-) True LOC110531887
XM_036987788.1 mRNA downstream 868757 29140350 ~ 29174588 (-) False LOC110531884
XR_005053222.1 mRNA downstream 868757 29140350 ~ 29174588 (-) True LOC110531884
XM_036987789.1 mRNA downstream 874414 29140350 ~ 29168931 (-) False LOC110531884
XM_036987787.1 mRNA downstream 903622 29070047 ~ 29139723 (-) False LOC110531883
LOC110532982 mRNA upstream 316221 30359807 ~ 30360792 (-) True LOC110532982
LOC118965933 mRNA upstream 789140 30832726 ~ 30834388 (-) True LOC118965933
XM_036986936.1 mRNA upstream 994492 31038078 ~ 31040215 (-) True LOC118965934
LOC110531151 mRNA upstream 1325897 31369483 ~ 31494494 (-) True LOC110531151
XM_021615393.2 mRNA upstream 1729381 31772967 ~ 31780212 (-) True LOC110531916
TU900193 other downstream 894328 29131374 ~ 29149017 (-) True G790598
TU900144 other downstream 974158 29068852 ~ 29069187 (-) True G790551
TU900128 other downstream 994101 29048898 ~ 29049244 (-) True G790535
TU900103 other downstream 999538 29043436 ~ 29043807 (-) True LOC110531881
TU899489 other downstream 1377287 28663451 ~ 28666058 (-) False G789945
TU901919 other upstream 271724 30315310 ~ 30357964 (-) True G792267
TU903165 other upstream 1359896 31403482 ~ 31403869 (-) True G793472
TU903182 other upstream 1374869 31418455 ~ 31418973 (-) True G793489
TU903541 other upstream 1617653 31661239 ~ 31662198 (-) True G793842
TU904054 other upstream 1982485 32026071 ~ 32028268 (-) False G794311

Expression Profile