RNA id: TU902161



Basic Information


Item Value
RNA id TU902161
length 221
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G792500
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 30624529 ~ 30624749 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tttcaaagcCGGGTGTTTGCAACCCAACGGGACAATCTTAattgaacttgcaaacttccAAAACTGCAATAACTCGCGCTCCAATAGCCTATTGGGAATAAACGGCGGTACGTTCGAAATCGTTACCCTTGTTGAAAGAGAGACAAGCGGCGGAACTTGAATGCTCAACTATTcgatcaacaagacgctcttctttaagaaaaacGACCACCGCTTTATTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU902159 lncRNA downstream 2129 30622192 ~ 30622400 (-) True G792498
TU902093 lncRNA downstream 81067 30528321 ~ 30543462 (-) True G792433
TU901560 lncRNA downstream 313842 30310478 ~ 30310687 (-) True G791925
TU901212 lncRNA downstream 543687 30080611 ~ 30080842 (-) True G791591
TU901200 lncRNA downstream 549723 30074416 ~ 30074806 (-) True G791579
TU902217 lncRNA upstream 88402 30713151 ~ 30723643 (-) True G792555
TU902415 lncRNA upstream 270278 30895027 ~ 30895265 (-) True G792745
TU902417 lncRNA upstream 271141 30895890 ~ 30896113 (-) True G792747
TU902419 lncRNA upstream 271565 30896314 ~ 30896537 (-) True G792749
TU902470 lncRNA upstream 305811 30930560 ~ 30930780 (-) True G792799
LOC110532982 mRNA downstream 263737 30359807 ~ 30360792 (-) True LOC110532982
XM_021615366.2 mRNA downstream 1270930 29344381 ~ 29353599 (-) True LOC110531887
XM_036987788.1 mRNA downstream 1449941 29140350 ~ 29174588 (-) False LOC110531884
XR_005053222.1 mRNA downstream 1449941 29140350 ~ 29174588 (-) True LOC110531884
XM_036987789.1 mRNA downstream 1455598 29140350 ~ 29168931 (-) False LOC110531884
LOC118965933 mRNA upstream 207977 30832726 ~ 30834388 (-) True LOC118965933
XM_036986936.1 mRNA upstream 413329 31038078 ~ 31040215 (-) True LOC118965934
LOC110531151 mRNA upstream 744734 31369483 ~ 31494494 (-) True LOC110531151
XM_021615393.2 mRNA upstream 1148218 31772967 ~ 31780212 (-) True LOC110531916
XM_021615398.2 mRNA upstream 1468445 32093194 ~ 32102718 (-) True LOC110531919
TU901919 other downstream 266565 30315310 ~ 30357964 (-) True G792267
TU900193 other downstream 1475512 29131374 ~ 29149017 (-) True G790598
TU900144 other downstream 1555342 29068852 ~ 29069187 (-) True G790551
TU900128 other downstream 1575285 29048898 ~ 29049244 (-) True G790535
TU900103 other downstream 1580722 29043436 ~ 29043807 (-) True LOC110531881
TU903165 other upstream 778733 31403482 ~ 31403869 (-) True G793472
TU903182 other upstream 793706 31418455 ~ 31418973 (-) True G793489
TU903541 other upstream 1036490 31661239 ~ 31662198 (-) True G793842
TU904054 other upstream 1401322 32026071 ~ 32028268 (-) False G794311
TU906814 other upstream 3426310 34051059 ~ 34057549 (-) True G796733

Expression Profile