RNA id: TU903165



Basic Information


Item Value
RNA id TU903165
length 388
RNA type TUCP
GC content 0.43
exon number 1
gene id G793472
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 31403482 ~ 31403869 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ggttcaaattgatgggaagatggatggagccaaatacaggaccattctggaagaaaacctgatggagtctgcaaaagacctgagactgggacggagatttgtcttccaacaagacaatgatccaaaacataaagccaaatctacaatggaatggttcaaaaataaacatatccaggtgttagaatggtcaagtcaaagtccagacctgaatccaatcgagaatctgtggaaagaactgaaaactgctgttcacaaatgctctccatccaacctcactgagctcgagctgttttgcaaggaggaatgggaaaaaacttcagtctctcgatgtgcaaaactgatagagacataccccaagcgacttacagctgtaatcgcagcaaaaggt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU903156 lncRNA downstream 4060 31399154 ~ 31399422 (-) True G793463
TU903148 lncRNA downstream 11070 31391971 ~ 31392412 (-) True G793455
TU903146 lncRNA downstream 12017 31391192 ~ 31391465 (-) True G793453
TU903081 lncRNA downstream 55044 31348023 ~ 31348438 (-) True G793390
TU903040 lncRNA downstream 92064 31311188 ~ 31311418 (-) True G793349
TU903173 lncRNA upstream 6740 31410609 ~ 31411030 (-) True G793480
TU903175 lncRNA upstream 7242 31411111 ~ 31411363 (-) True G793482
TU903184 lncRNA upstream 15298 31419167 ~ 31419584 (-) True G793491
TU903191 lncRNA upstream 19047 31422916 ~ 31423138 (-) True G793498
TU903200 lncRNA upstream 25433 31429302 ~ 31429561 (-) True G793507
XM_036986936.1 mRNA downstream 363267 31038078 ~ 31040215 (-) True LOC118965934
LOC118965933 mRNA downstream 569094 30832726 ~ 30834388 (-) True LOC118965933
LOC110532982 mRNA downstream 1042690 30359807 ~ 30360792 (-) True LOC110532982
XM_021615366.2 mRNA downstream 2049883 29344381 ~ 29353599 (-) True LOC110531887
XM_036987788.1 mRNA downstream 2228894 29140350 ~ 29174588 (-) False LOC110531884
XM_021615393.2 mRNA upstream 369098 31772967 ~ 31780212 (-) True LOC110531916
XM_021615398.2 mRNA upstream 689325 32093194 ~ 32102718 (-) True LOC110531919
XM_021615406.2 mRNA upstream 710435 32114304 ~ 32121299 (-) False slx1b
XM_021615402.2 mRNA upstream 710435 32114304 ~ 32121923 (-) False slx1b
XM_021615405.2 mRNA upstream 710435 32114304 ~ 32121948 (-) False slx1b
TU901919 other downstream 1045518 30315310 ~ 30357964 (-) True G792267
TU900193 other downstream 2254465 29131374 ~ 29149017 (-) True G790598
TU900144 other downstream 2334295 29068852 ~ 29069187 (-) True G790551
TU900128 other downstream 2354238 29048898 ~ 29049244 (-) True G790535
TU900103 other downstream 2359675 29043436 ~ 29043807 (-) True LOC110531881
TU903182 other upstream 14586 31418455 ~ 31418973 (-) True G793489
TU903541 other upstream 257370 31661239 ~ 31662198 (-) True G793842
TU904054 other upstream 622202 32026071 ~ 32028268 (-) False G794311
TU906814 other upstream 2647190 34051059 ~ 34057549 (-) True G796733
TU907768 other upstream 3466086 34869955 ~ 34875879 (-) True G797605

Expression Profile