RNA id: TU903532


Basic Information

Item Value
RNA id TU903532
length 1324
lncRNA type inter_gene
GC content 0.49
exon number 3
gene id G793836
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 31655907 ~ 31662310 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTCCCCCTCTTCACGTCTCCAAAGAGACGTGAAAACTACTCATATGTGCATGTTTCAAACTCCACCAGAGGATCCtcctgttgtaggagggggaACATCAGTGCAGGGTCATTATTTGGTGCAATAGCAGAAGTAATAACTCGAGAAAGCGGGCACATGGGATGCAACAACAGCCACAGAGGGTTAATattgcaacaaacacagagatagagaccAGAATAGAAGAGACCAGGACCTTATATTTACCAAATGCATCCATCCAGGAGTCCCACGTGCTGgtaTCAACCCCAGAGTGGGATTTCATTTTACCATTCAGGGTACGCAGGCCTTCTAACGCAACAGTGAGACTGCCATCAGAGGCTGTGTTATTGGGGATAAATGTGCAACATTGCTCCCCAAACATAAAACATATCCCACCCTTCTCAGCCAGCAACATGTCAACGGCAATGCGATTTTGAAAAGCCATAAGGGAGGTAGCCGCCAGTTGACCATGTATGGCCTCAAAACCTTGTTGAGTCCAGTTACCTAATTTTTGGACATTGAAATGTATATAGTTAATGCGGTCAACATTTTTATTCACAGTGCACCACCAGCAGAGAGATGATTCAAAACCTGCGGCGACCTGGTCCACCAGCTTGTACTCATCAGGGACCCCCCTAGGAACACCTATAGCATCAATATACGTGGGATCCCCAACAGTCAGGGCTGCTTCCCGCTTGGTTCTGGTAGGCAGAAACTGTGGGTCCACAGCCTGTATCCGGGTCACCAAATCACCCACACCTATAGGGTAAACAGAGATAGGCAGCAGAAGTGTTACAAGCGCACAAGTACCCGTAGCATTATTGGGAGGTCTGTCAAAAAGCCGAGgtcccccacaccaccaccagatGTCAGCCCTGATCACTGGCTTAAAACCACCAACTACTACGATAGTATTTGTACACCAACCAACAGGGAGCAAACCTAACTGTAGTATACCCCCTGTCATGTTAATACAGGAGAATTTGGCCCAGGCAACATCAGAGGAAAATACTGGTGCCCTGACCGTAGCGGAGACAACAGGGTAAACTGCATCCCACAAGGAGCAATTACCATGGCCGGGACAATGCGGAGCAATGGTCTGGCACCCATGCAAACTACGCAACTAGTGGGGGTTGTATTGGATGCTTGTTCGGTCAATAATAACCAATTGTTAGACAAACCTGAGACACCTGTAGCAACCCGAATGTTCTCATCCGGGGTAGGGGTAGTGACCACTAAAACAGCAGAACCCCACCCATCCCTGTGCTGGGGTAGGGTATGTGGCTTTGCCATACTGTCACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU903479 lncRNA upstream 41688 31613961 ~ 31614219 (+) True G793784
TU903434 lncRNA upstream 71358 31584248 ~ 31584549 (+) True G793739
TU903411 lncRNA upstream 93184 31562522 ~ 31562723 (+) True G793716
TU903385 lncRNA upstream 107859 31547820 ~ 31548048 (+) True G793690
TU903344 lncRNA upstream 132394 31523234 ~ 31523513 (+) True G793649
TU903537 lncRNA downstream 990 31663300 ~ 31663622 (+) True G793838
TU903538 lncRNA downstream 6547 31668857 ~ 31669505 (+) True G793839
TU903547 lncRNA downstream 11324 31673634 ~ 31673847 (+) True G793848
TU903555 lncRNA downstream 15855 31678165 ~ 31678440 (+) True G793856
TU903576 lncRNA downstream 27131 31689441 ~ 31689698 (+) True G793877
XM_021615372.2 mRNA upstream 1057560 30374371 ~ 30598347 (+) False LOC110531892
XM_021615371.2 mRNA upstream 1057560 30374372 ~ 30598347 (+) True LOC110531892
XM_021615374.2 mRNA upstream 1061857 30374371 ~ 30594050 (+) False LOC110531892
XM_021615373.2 mRNA upstream 1064829 30374372 ~ 30591078 (+) False LOC110531892
XR_002474771.2 mRNA upstream 1369668 30282637 ~ 30286239 (+) False LOC110531891
XM_021615392.2 mRNA downstream 90872 31753182 ~ 31757502 (+) False LOC110531915
XM_021615394.2 mRNA downstream 237750 31900060 ~ 31992396 (+) True LOC110531917
XM_021615397.2 mRNA downstream 340556 32002866 ~ 32027214 (+) True LOC110531918
XM_036986938.1 mRNA downstream 415308 32077618 ~ 32078723 (+) True LOC118965935
XM_021615407.2 mRNA downstream 449482 32111792 ~ 32114299 (+) True LOC110531922
TU903452 other upstream 58989 31595996 ~ 31596918 (+) True G793757
TU901372 other upstream 1367744 30282675 ~ 30288163 (+) False LOC110531891
TU901374 other upstream 1367744 30282675 ~ 30288163 (+) True LOC110531891
TU899899 other upstream 2313704 29339981 ~ 29342203 (+) False rbpjb
TU903612 other downstream 91025 31753335 ~ 31756445 (+) True LOC110531915
TU904135 other downstream 460372 32122682 ~ 32124851 (+) False zgc:112271
TU904136 other downstream 460372 32122682 ~ 32124736 (+) False zgc:112271
TU904137 other downstream 460372 32122682 ~ 32124438 (+) True zgc:112271
TU904700 other downstream 839537 32501847 ~ 32502355 (+) True G794892

Expression Profile