RNA id: TU903606



Basic Information


Item Value
RNA id TU903606
length 226
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G793907
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 31708639 ~ 31708864 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtattcagaccctttgctatgagactcgaaattgctttcaggtgcatcctgtttccattaatcatccttgagatgtttctacgacttgttcggagtccacctgtagtaaattcaattgattggacatgattaggaAGGCACATgataaggtcccagagttgacagtgcatgccagagcaaaaaccaagcaatgaggtcgaaggaattgtccttagagctctgagac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU903576 lncRNA upstream 18941 31689441 ~ 31689698 (+) True G793877
TU903555 lncRNA upstream 30199 31678165 ~ 31678440 (+) True G793856
TU903547 lncRNA upstream 34792 31673634 ~ 31673847 (+) True G793848
TU903538 lncRNA upstream 39134 31668857 ~ 31669505 (+) True G793839
TU903537 lncRNA upstream 45017 31663300 ~ 31663622 (+) True G793838
TU903677 lncRNA downstream 83113 31791977 ~ 31792199 (+) True G793956
TU903681 lncRNA downstream 86266 31795130 ~ 31795341 (+) True G793960
TU903696 lncRNA downstream 105005 31813869 ~ 31814124 (+) True G793975
TU903664 lncRNA downstream 119747 31828611 ~ 31828837 (+) True G793943
TU903715 lncRNA downstream 122571 31831435 ~ 31831936 (+) True G793992
XM_021615372.2 mRNA upstream 1110292 30374371 ~ 30598347 (+) False LOC110531892
XM_021615371.2 mRNA upstream 1110292 30374372 ~ 30598347 (+) True LOC110531892
XM_021615374.2 mRNA upstream 1114589 30374371 ~ 30594050 (+) False LOC110531892
XM_021615373.2 mRNA upstream 1117561 30374372 ~ 30591078 (+) False LOC110531892
XR_002474771.2 mRNA upstream 1422400 30282637 ~ 30286239 (+) False LOC110531891
XM_021615392.2 mRNA downstream 44318 31753182 ~ 31757502 (+) False LOC110531915
XM_021615394.2 mRNA downstream 191196 31900060 ~ 31992396 (+) True LOC110531917
XM_021615397.2 mRNA downstream 294002 32002866 ~ 32027214 (+) True LOC110531918
XM_036986938.1 mRNA downstream 368754 32077618 ~ 32078723 (+) True LOC118965935
XM_021615407.2 mRNA downstream 402928 32111792 ~ 32114299 (+) True LOC110531922
TU903452 other upstream 111721 31595996 ~ 31596918 (+) True G793757
TU901372 other upstream 1420476 30282675 ~ 30288163 (+) False LOC110531891
TU901374 other upstream 1420476 30282675 ~ 30288163 (+) True LOC110531891
TU899899 other upstream 2366436 29339981 ~ 29342203 (+) False rbpjb
TU903612 other downstream 44471 31753335 ~ 31756445 (+) True LOC110531915
TU904135 other downstream 413818 32122682 ~ 32124851 (+) False zgc:112271
TU904136 other downstream 413818 32122682 ~ 32124736 (+) False zgc:112271
TU904137 other downstream 413818 32122682 ~ 32124438 (+) True zgc:112271
TU904700 other downstream 792983 32501847 ~ 32502355 (+) True G794892

Expression Profile