RNA id: TU903772


Basic Information

Item Value
RNA id TU903772
length 451
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G794043
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 31791727 ~ 31792177 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacaccaggcaggtccgagatactgttgtgaagaagtttaaagccggatttggatacaaaaagatttcccaagctttaaacatcccaaggagcactgtgcaagcgataatattgaaatggaaggcgtatcagaccactgcaaatctaccaagacctggccgtccctctaaactttcagttcatacaaggagaaaactgatcagagatgcagccaagaggcccatgatcactctggatgaactgcagagatctacagctgaggtgggagactctgtccataggacaacaatcagtcgtatattgcacaaatctggcctttatggaagagtggcaagaagaaagacatttcttaaagatatccataaaaagtgttgtttaaagtttgccacaagccacctgggagacaagccacctgtaatcgcagcaaaaggtggcgctacaaagtattaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU903771 lncRNA downstream 225 31791108 ~ 31791502 (-) True G794042
TU903561 lncRNA downstream 110113 31681382 ~ 31681614 (-) True G793862
TU903556 lncRNA downstream 113509 31678005 ~ 31678218 (-) True G793857
TU903457 lncRNA downstream 191329 31600056 ~ 31600398 (-) True G793762
TU903455 lncRNA downstream 193795 31597645 ~ 31597932 (-) True G793760
TU903776 lncRNA upstream 3440 31795617 ~ 31795839 (-) True G794047
TU903777 lncRNA upstream 5908 31798085 ~ 31798297 (-) True G794048
TU903792 lncRNA upstream 22699 31814876 ~ 31815094 (-) True G794063
TU903802 lncRNA upstream 34212 31826389 ~ 31826890 (-) True G794073
TU903804 lncRNA upstream 37592 31829769 ~ 31830074 (-) True G794075
XM_021615393.2 mRNA downstream 11515 31772967 ~ 31780212 (-) True LOC110531916
LOC110531151 mRNA downstream 297233 31369483 ~ 31494494 (-) True LOC110531151
XM_036986936.1 mRNA downstream 751512 31038078 ~ 31040215 (-) True LOC118965934
LOC118965933 mRNA downstream 957339 30832726 ~ 30834388 (-) True LOC118965933
LOC110532982 mRNA downstream 1430935 30359807 ~ 30360792 (-) True LOC110532982
XM_021615398.2 mRNA upstream 301017 32093194 ~ 32102718 (-) True LOC110531919
XM_021615406.2 mRNA upstream 322127 32114304 ~ 32121299 (-) False slx1b
XM_021615402.2 mRNA upstream 322127 32114304 ~ 32121923 (-) False slx1b
XM_021615405.2 mRNA upstream 322127 32114304 ~ 32121948 (-) False slx1b
XM_021615401.2 mRNA upstream 322127 32114304 ~ 32122092 (-) False slx1b
TU903541 other downstream 129529 31661239 ~ 31662198 (-) True G793842
TU903182 other downstream 372754 31418455 ~ 31418973 (-) True G793489
TU903165 other downstream 387858 31403482 ~ 31403869 (-) True G793472
TU901919 other downstream 1433763 30315310 ~ 30357964 (-) True G792267
TU900193 other downstream 2642710 29131374 ~ 29149017 (-) True G790598
TU904054 other upstream 233894 32026071 ~ 32028268 (-) False G794311
TU906814 other upstream 2258882 34051059 ~ 34057549 (-) True G796733
TU907768 other upstream 3077778 34869955 ~ 34875879 (-) True G797605
TU908405 other upstream 3562042 35354219 ~ 35354675 (-) True G798195
TU908411 other upstream 3593676 35385853 ~ 35387132 (-) False LOC110531966

Expression Profile