RNA id: TU903717



Basic Information


Item Value
RNA id TU903717
length 212
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G793994
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 31840875 ~ 31841086 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tcatcacattcccagtgggtcagaagtttacatacattcaattagtatttggtagcattgcctttaaattgtttaacttaggtcaaacgtttcgggtagccttccacaatcttcccacaataagttgggtgaatttaggcccattcctcctgacagaaatagtgtaactgagtcaggtttgtaagcatccttgctcgcacacgctttttcag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU903715 lncRNA upstream 8939 31831435 ~ 31831936 (+) True G793992
TU903664 lncRNA upstream 12038 31828611 ~ 31828837 (+) True G793943
TU903696 lncRNA upstream 26751 31813869 ~ 31814124 (+) True G793975
TU903681 lncRNA upstream 45534 31795130 ~ 31795341 (+) True G793960
TU903677 lncRNA upstream 48676 31791977 ~ 31792199 (+) True G793956
TU903719 lncRNA downstream 3990 31845076 ~ 31845359 (+) True G793996
TU903826 lncRNA downstream 25430 31866516 ~ 31866747 (+) True G794094
TU903830 lncRNA downstream 26557 31867643 ~ 31867857 (+) True G794098
TU903864 lncRNA downstream 49908 31890994 ~ 31891194 (+) True G794130
TU903875 lncRNA downstream 56302 31897388 ~ 31897611 (+) True G794141
XM_021615392.2 mRNA upstream 83373 31753182 ~ 31757502 (+) False LOC110531915
XM_021615372.2 mRNA upstream 1242528 30374371 ~ 30598347 (+) False LOC110531892
XM_021615371.2 mRNA upstream 1242528 30374372 ~ 30598347 (+) True LOC110531892
XM_021615374.2 mRNA upstream 1246825 30374371 ~ 30594050 (+) False LOC110531892
XM_021615394.2 mRNA downstream 58974 31900060 ~ 31992396 (+) True LOC110531917
XM_021615397.2 mRNA downstream 161780 32002866 ~ 32027214 (+) True LOC110531918
XM_036986938.1 mRNA downstream 236532 32077618 ~ 32078723 (+) True LOC118965935
XM_021615407.2 mRNA downstream 270706 32111792 ~ 32114299 (+) True LOC110531922
NM_001160518.1 mRNA downstream 281673 32122759 ~ 32124753 (+) False zgc:112271
TU903612 other upstream 84430 31753335 ~ 31756445 (+) True LOC110531915
TU903452 other upstream 243957 31595996 ~ 31596918 (+) True G793757
TU901372 other upstream 1552712 30282675 ~ 30288163 (+) False LOC110531891
TU901374 other upstream 1552712 30282675 ~ 30288163 (+) True LOC110531891
TU899896 other upstream 2498672 29340447 ~ 29342203 (+) True rbpjb
TU904135 other downstream 281596 32122682 ~ 32124851 (+) False zgc:112271
TU904136 other downstream 281596 32122682 ~ 32124736 (+) False zgc:112271
TU904137 other downstream 281596 32122682 ~ 32124438 (+) True zgc:112271
TU904700 other downstream 660761 32501847 ~ 32502355 (+) True G794892
TU904701 other downstream 661310 32502396 ~ 32502749 (+) True G794893

Expression Profile