RNA id: TU904170


Basic Information

Item Value
RNA id TU904170
length 270
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G794418
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 32167704 ~ 32167973 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctcacactcaacgtcaacaaaactaaggagatgattgtggacttcaggaaacagcagagggaacacccccctatccacatcgatggaacagtagtggagagggtagaaagttttaagttcctcggcgtacacatcacagacaaaccaaattggtccacccacacagacagcatcgtgaagaaggcgcagcagcgcctcttcaacctcaggaggctgaagaaattcagcttgtcaccaaaagcactcacaaacttctacagatgcacaatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU904169 lncRNA upstream 51 32167380 ~ 32167653 (+) True G794417
TU904167 lncRNA upstream 3742 32163556 ~ 32163962 (+) True G794415
TU904127 lncRNA upstream 39769 32104528 ~ 32127935 (+) True G794377
TU904062 lncRNA upstream 127061 32040370 ~ 32040643 (+) True G794318
TU903899 lncRNA upstream 244744 31922734 ~ 31922960 (+) True G794165
TU904171 lncRNA downstream 9 32167982 ~ 32168294 (+) True G794419
TU904174 lncRNA downstream 3870 32171843 ~ 32172042 (+) True G794422
TU904198 lncRNA downstream 43170 32211143 ~ 32211447 (+) True G794440
TU904199 lncRNA downstream 44548 32212521 ~ 32212764 (+) True G794441
TU904210 lncRNA downstream 53610 32221583 ~ 32223515 (+) False G794450
NM_001160518.1 mRNA upstream 42951 32122759 ~ 32124753 (+) False zgc:112271
XM_021615407.2 mRNA upstream 53405 32111792 ~ 32114299 (+) True LOC110531922
XM_036986938.1 mRNA upstream 88981 32077618 ~ 32078723 (+) True LOC118965935
XM_021615397.2 mRNA upstream 140490 32002866 ~ 32027214 (+) True LOC110531918
XM_021615394.2 mRNA upstream 175308 31900060 ~ 31992396 (+) True LOC110531917
XM_021615423.2 mRNA downstream 326517 32494490 ~ 32498602 (+) True rpl34
XM_021615424.1 mRNA downstream 352105 32520078 ~ 32539651 (+) True ostc
trnag-ucc-3 mRNA downstream 866972 33034945 ~ 33035016 (+) False trnag-ucc-3
trnag-ucc-4 mRNA downstream 867478 33035451 ~ 33035522 (+) True trnag-ucc-4
trnag-ucc-6 mRNA downstream 874619 33042592 ~ 33042663 (+) True trnag-ucc-6
TU904135 other upstream 42853 32122682 ~ 32124851 (+) False zgc:112271
TU904136 other upstream 42968 32122682 ~ 32124736 (+) False zgc:112271
TU904137 other upstream 43266 32122682 ~ 32124438 (+) True zgc:112271
TU903612 other upstream 411259 31753335 ~ 31756445 (+) True LOC110531915
TU903452 other upstream 570786 31595996 ~ 31596918 (+) True G793757
TU904700 other downstream 333874 32501847 ~ 32502355 (+) True G794892
TU904701 other downstream 334423 32502396 ~ 32502749 (+) True G794893
TU904694 other downstream 415633 32583606 ~ 32587388 (+) True G794886
TU906563 other downstream 1953449 34121422 ~ 34121740 (+) True G796495
TU907166 other downstream 2387958 34555931 ~ 34556622 (+) True G797056

Expression Profile