RNA id: TU904210


Basic Information

Item Value
RNA id TU904210
length 1933
lncRNA type antisense_over
GC content 0.38
exon number 1
gene id G794450
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 32221583 ~ 32223556 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCACCAATATCGCAGCTTGCACTAAACAAGACAGATATATTATTTTCTATTGAATTTCTATGGCAACCAACTTTCCTTTTTTTGTTATCCAATTAATAACAGTGAAAAATATTCCACATAGAACTAAATAAATGAGGGACAAAAGTATGAAAAACACATTACAGCAACCTGTTTGACATTCAGGTAGTAATTGCTTAAGTCCTTTCACACACATGATGATTACTGTTTTGAAAGGGATCTCCCTTTCCGCTTCAGGAAAAAAACAACACCAAAACCAAATAAAACAACCATACCATTATCATCATTACTATATAGTAATCCATTTTCTATACATATATAAAATCATAGTTATTTGCAATGGTACATTTTAATTACACTTAAACAAAATTGTTATGAAACAAAGTAAATCCCATATTTTTTGGTGTCAAAACACTTGCATATGTACTCTTCAGAACAGAAATGTATACAGTTAAGTGACAGTTTTTCACCTCAGAATTGATTTCCCCTTGATTACCCCTTTGACAAATACAGACTAAGCATTTACCATAACTATTTTTTTAACAACTTTGAATACCATGTACAGTTCATGGCTACTATTATTTCCCATCAAACACATACTGTGGGTAGAAACCATTGTTCCTAAACTGCGAAAATGTTTCTTGAAATATGTTTCCTGAAACTGCGAAAATTTTTCTTGAAATATGCATTTTCTTCGCAAACGGATAATGGGTTTGTCGTTCAATGGTTTTTATTATGTTCTGCTGAttgtttttaaatacatttttacattatcTGAATGTGTCCACTCATTGGAGATGAAAGCAGGGATGACAGGAAAGGACACTAAGAGAGCCAGCCAAGAACCAGACAAGAGGTCTACTTCTCACAACTTCAACTCAAGAGCACCCCTATAAAAAAAGTTAATTTCACCATCTCATAATATCCATGACCATAGATTATGAGAAAGACGAGGCCCTAGTAAGAAAACCGATACAGTACAATAACTACTATTTAAGAGAAGGAACATACAGTATTCTGGGCACCCACTATCGATGTGTTGATACTGCATGATGGGAGTACTGCACAACGATGCGTTTCATAAAGCTTCCGATGGATGAACAAATACAATCATACTAGCAGAAACCCCCAAACCTTTAGTTCATTTGTTAAATACACTAATCAACAGAAAATTAAAAATGAGAAACCTTCTCCAACTTCTTGAAGGCCACCAATCATCGTTTCAATGACTAATTATATTAACCGAGTTTCATTCCatttaataaaaaaaagtttACCCCCAACCACAAGGCTCTTGATGAAGAGAGGAACATTAGTATATAGCTTCACAGAGAGGGATATAAGAACAATATGGTAGGTAGAGGTGTAACTGTTATCTAACCTCATCTGCTCTGGGCCCACGCCACTAATGccaaagacagaggagagagattaCTTTTATTCAAAACGTATGCCCAGTTTCATTTCATGTCCCTTTTCCTCACACCCtatgactttttgcaaatgtgAAGGAGTACACAGTGTGATGAAGGCTCCACCTAGCCCTCTTATAGGAGTGAGGTTTGTGCCAAATTGCCTTCACCTAGGATACCCTTCAGATCTGTGAACACTGACGGGGTAGAAGCTGAGGAAAGAGGGGCTAGGGACTAAAATGCAACCAAGTCTTAGGAATACCCCGTTCACCCATTGGATCAGACTGCAGCATCTAGATCTCTTAGAACAGAGAGCCAGTGGAGTGAAACATCCACACAATGGGAGGAGTGTAACTGTTCATTGGTAGGGTCCAATGAAGTAGGTTACGTCCTGGGAAACTTTCTAGTCAAAGACAGCCATTATGAGGTCAGTATATTTCGGGACAGGACTACCAGCTGCCTTTCTCCTTAGCCTCCCAGTAGCCTCCCTTATGTGAGTAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU904199 lncRNA upstream 8819 32212521 ~ 32212764 (+) True G794441
TU904198 lncRNA upstream 10136 32211143 ~ 32211447 (+) True G794440
TU904174 lncRNA upstream 49541 32171843 ~ 32172042 (+) True G794422
TU904171 lncRNA upstream 53289 32167982 ~ 32168294 (+) True G794419
TU904170 lncRNA upstream 53610 32167704 ~ 32167973 (+) True G794418
TU904221 lncRNA downstream 8789 32232304 ~ 32232527 (+) True G794456
TU904355 lncRNA downstream 43276 32266791 ~ 32267041 (+) True G794576
TU904365 lncRNA downstream 52615 32276130 ~ 32283607 (+) True G794585
TU904631 lncRNA downstream 241756 32465271 ~ 32465573 (+) True G794847
TU904637 lncRNA downstream 244387 32467902 ~ 32468362 (+) True G794853
NM_001160518.1 mRNA upstream 96830 32122759 ~ 32124753 (+) False zgc:112271
XM_021615407.2 mRNA upstream 107284 32111792 ~ 32114299 (+) True LOC110531922
XM_036986938.1 mRNA upstream 142860 32077618 ~ 32078723 (+) True LOC118965935
XM_021615397.2 mRNA upstream 194369 32002866 ~ 32027214 (+) True LOC110531918
XM_021615394.2 mRNA upstream 229187 31900060 ~ 31992396 (+) True LOC110531917
XM_021615423.2 mRNA downstream 270975 32494490 ~ 32498602 (+) True rpl34
XM_021615424.1 mRNA downstream 296563 32520078 ~ 32539651 (+) True ostc
trnag-ucc-3 mRNA downstream 811430 33034945 ~ 33035016 (+) False trnag-ucc-3
trnag-ucc-4 mRNA downstream 811936 33035451 ~ 33035522 (+) True trnag-ucc-4
trnag-ucc-6 mRNA downstream 819077 33042592 ~ 33042663 (+) True trnag-ucc-6
TU904135 other upstream 96732 32122682 ~ 32124851 (+) False zgc:112271
TU904136 other upstream 96847 32122682 ~ 32124736 (+) False zgc:112271
TU904137 other upstream 97145 32122682 ~ 32124438 (+) True zgc:112271
TU903612 other upstream 465138 31753335 ~ 31756445 (+) True LOC110531915
TU903452 other upstream 624665 31595996 ~ 31596918 (+) True G793757
TU904700 other downstream 278332 32501847 ~ 32502355 (+) True G794892
TU904701 other downstream 278881 32502396 ~ 32502749 (+) True G794893
TU904694 other downstream 360091 32583606 ~ 32587388 (+) True G794886
TU906563 other downstream 1897907 34121422 ~ 34121740 (+) True G796495
TU907166 other downstream 2332416 34555931 ~ 34556622 (+) True G797056

Expression Profile