RNA id: TU904500


Basic Information

Item Value
RNA id TU904500
length 1446
lncRNA type sense_over
GC content 0.38
exon number 2
gene id G794720
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 32271809 ~ 32329256 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gacaagttataagataaataactgccttagtggagcatgtgataacacctttgattgggatctgtttccctgtttgggggtgtttgaaggatctacatttgtaagtgccattgcattgagtgCAGCCATTGCTCTTGTAGTTTCCATCCGATAGAGGCGCAAATAGACATTGTGCAGGGATattttggggtggtaaatcagtgtttaccaattgatctctgagatttctgccccactagaatacgaccaagggagggtccgaaaacacattaccggCACTGTCATCGGatcttagaatgtgccaatgtttgtgaacgatacccttaatttgttcagagcactttgaatgGTGGTGTCTATTATcatactattttttttaaactatcaaATATGAAGTCAACCTCATACACTTCAAGGATTGactattataataattgattggTTTTCTGGAGACTTCCCCTGTGTGTTTGCCCCATTTATGCATTGTTTGCTGGTATAAAGTATGAGGGCTTTAGATACCACATTGCCTCCTGATAGTCTACAAGTATGCTACATTATACTGatgctatttatttatttgtttattaccACACCTGTCTTTAAAGTGTAGGCGCTAAAGTCAAGAGGCAGATTGGGCTATCACTCCCAATGGATCATTTCTTCTCCCATGCACACAGGCGCACACATGAAAACACAAATTAGAAAGCCAAGATATATATTTTAAGCACACCCTTATTCACATTCAGATAATAAGATAAGATGTTttccacacacacttttttttcatCTTCGCTAAACAGTGCCCATTGCCTTATCCTGTAGTACGATCCAGAGAAAAAGAGAACTGTGTCTGtggctagaatacagtatacaagtCAGGCATATTCTGTCATTGAGTCCCTCCTACCCACACGCTCATTAGTCTTGCCTCACCTCACCACTTGTTCTTACCCTTTTTTTCTTAGGTGGGTGTCGATTGCTTGAGTTCACACTTCCCCAACCTTAGAGAAAGGTTGTTCATGTTGCGCTTTTCATTCATCCTCACTTTTCCAGCTTCCCTTATGTCTGCTGTCACAGGTGCTGTATGCATAAAGTATCCTGAAAGGCTCCTGTCAAAGAATCTTGTATGAGCAAAGGCAAAGTTGTATGGAATATTTGTGAACAAGCATGAATGATGAGCTAAAAATGCAAAAACAATCGGTTTAGCATGTGAAACACATTGAGTGCAGATTATAGGGTATAAGTCGACCACGAATACACATTTTTGCACTGTAAATGTAAATGTCTTTATTTTATTGGTGTTAATGtaagatttatttatttaaggtGTACATAATATACAGACAAATTAACTATATAATCTATATGTGTAAAATAACTATGTAAAACTCTACTGTAAAACAAAGTATCTATTACAACAATGAATAAAGGTAACAAAGAAATGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU904361 lncRNA downstream 1972 32269500 ~ 32269837 (-) True G794582
TU904358 lncRNA downstream 4179 32267389 ~ 32267630 (-) True G794579
TU904352 lncRNA downstream 13327 32258250 ~ 32258482 (-) True G794574
TU904335 lncRNA downstream 46446 32224949 ~ 32225363 (-) True G794560
TU904302 lncRNA downstream 49059 32222074 ~ 32222750 (-) True LOC110531926
TU904649 lncRNA upstream 146980 32476236 ~ 32476451 (-) True G794863
TU904669 lncRNA upstream 151770 32481026 ~ 32487751 (-) False G794876
TU904678 lncRNA upstream 151819 32481075 ~ 32488033 (-) True G794876
TU904687 lncRNA upstream 159539 32488795 ~ 32489008 (-) True G794879
TU904688 lncRNA upstream 159837 32489093 ~ 32489515 (-) True G794880
XR_005053223.1 mRNA downstream 27887 32241007 ~ 32243922 (-) False LOC118966025
XR_005053224.1 mRNA downstream 27887 32241007 ~ 32243922 (-) True LOC118966025
XM_036987801.1 mRNA downstream 32346 32222127 ~ 32239463 (-) False LOC110531926
XM_021615413.2 mRNA downstream 50810 32217143 ~ 32220999 (-) True LOC110531924
XM_021615412.2 mRNA downstream 50813 32217143 ~ 32220996 (-) False LOC110531924
XR_005053225.1 mRNA upstream 183835 32513091 ~ 32513996 (-) True LOC118966026
XR_002474778.2 mRNA upstream 186813 32516069 ~ 32520096 (-) False LOC110531930
XR_002474779.2 mRNA upstream 186813 32516069 ~ 32520096 (-) True LOC110531930
XM_021615425.2 mRNA upstream 226103 32555359 ~ 32594324 (-) True etnppl
XM_021615442.2 mRNA upstream 270111 32599367 ~ 32956069 (-) False LOC110531933
TU904054 other downstream 243541 32026071 ~ 32028268 (-) False G794311
TU903541 other downstream 609611 31661239 ~ 31662198 (-) True G793842
TU903182 other downstream 852836 31418455 ~ 31418973 (-) True G793489
TU903165 other downstream 867940 31403482 ~ 31403869 (-) True G793472
TU901919 other downstream 1913845 30315310 ~ 30357964 (-) True G792267
TU906814 other upstream 1721803 34051059 ~ 34057549 (-) True G796733
TU907768 other upstream 2540699 34869955 ~ 34875879 (-) True G797605
TU908405 other upstream 3024963 35354219 ~ 35354675 (-) True G798195
TU908411 other upstream 3056597 35385853 ~ 35387132 (-) False LOC110531966
TU908458 other upstream 3162770 35492026 ~ 35521332 (-) True LOC118966032

Expression Profile