RNA id: TU904631



Basic Information


Item Value
RNA id TU904631
length 303
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G794847
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 32465271 ~ 32465573 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cttggctttcgaagaccttcgaaaggcagggtaggatagagtaggatagcagtttgggtctagagtgtctccccctctgaagagggggatgaccgcggcagctttccaatatttGGTGATCTCAGATGATACAAAATAATGGTTGAACATTCTAgttataggggttgcaacaattttggcagataattttagaaagagaaggtccagattgtctagcccagctgatttgtagggatccagattttgcagctttttctgaacatcagctgtctggatttcggtgaaggagaagcggggaggact

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU904365 lncRNA upstream 181664 32276130 ~ 32283607 (+) True G794585
TU904355 lncRNA upstream 198230 32266791 ~ 32267041 (+) True G794576
TU904221 lncRNA upstream 232744 32232304 ~ 32232527 (+) True G794456
TU904214 lncRNA upstream 241715 32221583 ~ 32223556 (+) True G794450
TU904210 lncRNA upstream 241756 32221583 ~ 32223515 (+) False G794450
TU904637 lncRNA downstream 2329 32467902 ~ 32468362 (+) True G794853
TU904646 lncRNA downstream 10547 32476120 ~ 32476323 (+) True G794860
TU904657 lncRNA downstream 15096 32480669 ~ 32480901 (+) True G794871
TU904698 lncRNA downstream 28461 32494034 ~ 32494246 (+) True G794890
TU904702 lncRNA downstream 38185 32503758 ~ 32504005 (+) True G794894
NM_001160518.1 mRNA upstream 340518 32122759 ~ 32124753 (+) False zgc:112271
XM_021615407.2 mRNA upstream 350972 32111792 ~ 32114299 (+) True LOC110531922
XM_036986938.1 mRNA upstream 386548 32077618 ~ 32078723 (+) True LOC118965935
XM_021615397.2 mRNA upstream 438057 32002866 ~ 32027214 (+) True LOC110531918
XM_021615394.2 mRNA upstream 472875 31900060 ~ 31992396 (+) True LOC110531917
XM_021615423.2 mRNA downstream 28917 32494490 ~ 32498602 (+) True rpl34
XM_021615424.1 mRNA downstream 54505 32520078 ~ 32539651 (+) True ostc
trnag-ucc-3 mRNA downstream 569372 33034945 ~ 33035016 (+) False trnag-ucc-3
trnag-ucc-4 mRNA downstream 569878 33035451 ~ 33035522 (+) True trnag-ucc-4
trnag-ucc-6 mRNA downstream 577019 33042592 ~ 33042663 (+) True trnag-ucc-6
TU904135 other upstream 340420 32122682 ~ 32124851 (+) False zgc:112271
TU904136 other upstream 340535 32122682 ~ 32124736 (+) False zgc:112271
TU904137 other upstream 340833 32122682 ~ 32124438 (+) True zgc:112271
TU903612 other upstream 708826 31753335 ~ 31756445 (+) True LOC110531915
TU903452 other upstream 868353 31595996 ~ 31596918 (+) True G793757
TU904700 other downstream 36274 32501847 ~ 32502355 (+) True G794892
TU904701 other downstream 36823 32502396 ~ 32502749 (+) True G794893
TU904694 other downstream 118033 32583606 ~ 32587388 (+) True G794886
TU906563 other downstream 1655849 34121422 ~ 34121740 (+) True G796495
TU907166 other downstream 2090358 34555931 ~ 34556622 (+) True G797056

Expression Profile